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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85801-85850 / 86044 show all
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.7698
96.5789
42.2354
60.5712
5646200563877117534
97.7046
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
44.4394
41.1352
48.3208
59.7393
726910402722377257546
97.6828
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.3787
92.9984
46.9277
41.3270
6867517684377397577
97.9067
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
46.9955
42.3432
52.7964
40.4686
872111875866677487585
97.8962
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
65.1835
87.6412
51.8876
46.8905
90771280904483867588
90.4841
gduggal-bwavardINDELD6_15*het
73.6436
98.1194
58.9409
57.7838
113742181128678627644
97.2272
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
gduggal-bwavardINDELD6_15**
62.6145
59.4780
66.1003
55.5649
15519105731536778817658
97.1704
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
64.9932
93.6517
49.7646
52.1813
7863533782278967660
97.0111
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.5742
45.9865
56.1787
51.4566
10232120181013879087671
97.0030
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
jpowers-varprowlINDELD6_15*het
70.9404
91.9945
57.7285
54.4042
106649281068978277764
99.1951
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
70.9040
85.7657
60.4321
53.0525
9526158116837110247799
70.7456
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
59.8797
85.7519
46.0008
48.3317
71741192716684127803
92.7603
ghariani-varprowlINDELD6_15*het
73.5164
97.8175
58.8869
57.8444
113392531136479347830
98.6892
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
65.0019
66.3696
63.6895
52.5107
13181667919510111237883
70.8712
ciseli-customSNPti**
98.3062
98.8974
97.7221
19.7040
2062524229942057571479637893
16.4564
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6909
92.5107
78.0901
74.9769
56454573275191897904
86.0159
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
anovak-vgINDEL*HG002compoundhethet
52.7411
50.6595
55.0010
54.9014
2074202013874113517959
70.1172
gduggal-snapvardINDELI6_15*het
64.9859
82.1571
53.7516
42.4853
824217901159199737974
79.9559
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
77.1368
72.0532
82.9923
72.5173
1122343534522592687975
86.0488
jpowers-varprowlINDELD6_15**
59.8326
55.9329
64.3169
53.9833
14594114981458980948006
98.9128
mlin-fermikitSNPti*homalt
99.0118
99.0588
98.9648
15.5441
795481755879550283218052
96.7672
ciseli-customINDEL*HG002complexvar*
81.0665
80.3871
81.7575
57.5412
618451508961574137398055
58.6287
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
ghariani-varprowlINDELD6_15**
61.5999
58.5275
65.0128
56.9372
15271108211526582158072
98.2593
mlin-fermikitSNPti**
98.9073
98.2768
99.5460
14.9446
204958135937204957293488085
86.4891
gduggal-snapvardINDELI6_15**
50.7754
45.6827
57.1459
41.2412
113381348113483101118109
80.1998
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.2556
85.1120
46.6359
49.9659
71461250718182178174
99.4767
gduggal-snapvardINDEL*HG002complexvarhet
85.1014
90.1233
80.6095
59.0444
41646456451233123248222
66.7154
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.2473
96.5460
49.2736
54.6440
8106290814083808238
98.3055
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.1139
37.4782
48.0583
42.5126
771912877771083338271
99.2560
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50het
69.5027
72.7855
66.5031
38.8732
11471428921148106528272
77.6568
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
78.0403
92.7260
67.3704
39.0451
96507571892391658275
90.2891
mlin-fermikitINDEL**het
96.2161
96.8146
95.6251
53.1659
187949618418751685798282
96.5381
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8395
42.0033
50.4468
47.0151
865111945863784848329
98.1730
ciseli-customSNP*HG002complexvar*
95.9712
96.9985
94.9655
20.7202
73174222643718679381008358
21.9370
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
45.9726
41.2090
51.9814
51.1983
916913081915684588386
99.1487
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.9708
71.4018
70.5450
38.3153
1752270182227693018410
90.4204