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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85751-85800 / 86044 show all
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
74.2424
96.3582
60.3834
43.4396
10028379998565516388
97.5118
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
64.5823
60.5420
69.2004
40.5056
1485796831473965606397
97.5152
anovak-vgINDELI6_15**
44.4248
38.7222
52.0973
38.6048
961215211951487486474
74.0055
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.9084
97.6773
45.3144
61.3396
5467130546966006491
98.3485
gduggal-bwavardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
48.3943
45.1362
52.1594
60.4503
72438804721066136501
98.3064
anovak-vgSNPtv**
98.3366
98.3717
98.3016
24.5602
95390815790951566164416526
39.6934
gduggal-snapplatINDEL***
76.4210
69.0418
85.5664
67.7420
237878106664258555436146600
15.1328
anovak-vgINDELD1_5*het
92.1131
94.4127
89.9228
55.4448
8268148938677197246623
68.1098
ndellapenna-hhgaINDEL***
97.3838
97.0938
97.6756
75.8762
3345291001333524979786638
83.2038
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
52.1766
96.2264
35.7920
50.1344
3723146371766686640
99.5801
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
57.3405
87.8864
42.5514
59.2810
4919678495066836644
99.4164
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
37.1023
33.8847
40.9951
49.8226
46719114463966776648
99.5657
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
61.3598
97.0699
44.8576
61.9828
5433164546567186663
99.1813
mlin-fermikitINDEL*HG002compoundhethet
43.9232
77.6258
30.6263
58.8856
3178916298367576682
98.8900
egarrison-hhgaINDEL***
97.4253
97.1646
97.6874
75.7607
334773976933527679376682
84.1880
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.2865
63.0325
63.5426
64.6177
197961161019777113476716
59.1875
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.2865
63.0325
63.5426
64.6177
197961161019777113476716
59.1875
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.5123
94.3255
47.8735
39.2649
6300379628168396729
98.3916
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
55.2412
96.6262
38.6762
52.9026
4296150428367916733
99.1459
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.8008
44.4493
54.0968
38.3719
811610143806868466736
98.3932
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.8104
37.5245
44.7270
52.3629
55489237550568036744
99.1327
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
71.5972
91.9862
58.6068
39.8738
9573834960867866745
99.3958
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
54.5816
47.5637
64.0290
69.1270
740981681439580876755
83.5291
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
74.0005
97.9533
59.4604
43.3923
101942131022669726772
97.1314
gduggal-bwavardINDELI6_15*het
71.5920
95.0364
57.4257
53.1216
9535498951270526790
96.2847
gduggal-bwavardINDELI6_15**
60.2022
55.3881
65.9327
50.0878
13749110741368570716805
96.2382
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
51.3899
95.4252
35.1633
52.7695
3692177371568506821
99.5766
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
44.0104
40.4063
48.3203
59.8954
64849563648769386879
99.1496
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
50.1118
85.0427
35.5215
51.6283
3781665380469056879
99.6235
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
46.6247
43.6219
50.0715
62.1939
70009047700369836898
98.7828
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.4738
29.1984
36.5769
50.5553
40259760402269746937
99.4695
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.3630
32.4556
38.8425
53.3428
44749311447070386992
99.3464
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
36.2353
32.7562
40.5412
52.4633
48439942483970977056
99.4223
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.1515
85.9467
88.3906
61.9558
5616791845597673527082
96.3275
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
79.2304
81.6976
76.9079
69.6191
2513156302769383157083
85.1834
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
61.3754
57.2372
66.1586
39.2942
14046104941402171727085
98.7869
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
62.9779
59.7881
66.5273
42.2033
1467298681464273677111
96.5250
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
39.0121
35.9892
42.5893
55.2279
53219464531671667112
99.2464
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
58.4872
85.5667
44.4273
41.2283
5715964574871907163
99.6245
ciseli-customINDELD1_5*homalt
89.1477
94.5898
84.2977
60.0900
4627926474606785817193
83.8247
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
63.5479
97.2152
47.2013
46.3823
6493186652773017199
98.6029
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
63.3637
60.1216
66.9753
55.5677
18883125251989198087269
74.1130
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8569
39.4929
49.3052
41.4961
721111048720374067360
99.3789
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.3208
43.7811
51.4831
46.1266
799410265798475247396
98.2988
ciseli-customINDELI1_5*het
91.4560
94.1106
88.9472
61.0454
7438546557480192957503
80.7208