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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85501-85550 / 86044 show all
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.4924
85.2853
57.2248
41.5985
1136196539040293815
94.6885
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.1646
71.9865
80.8576
48.0795
1601762331653739153818
97.5223
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
59.5875
61.0924
58.1549
41.9454
36242308562340463831
94.6861
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
52.8397
49.0718
57.2344
61.3327
49435130571642713848
90.0960
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.6262
97.1009
76.5768
51.4227
121583631293039553851
97.3704
eyeh-varpipeINDELD1_5HG002compoundhethomalt
11.1474
96.9072
5.9138
65.1721
282924338663861
99.8707
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0274
90.4837
76.7064
50.3167
1322613911293539283882
98.8289
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
69.4306
91.0941
56.0913
63.9073
3222315525841163904
94.8494
mlin-fermikitSNP*map_l100_m1_e0homalt
73.8610
67.4221
81.6596
48.7624
1820687971820640893913
95.6958
ckim-isaacINDEL**het
96.5214
95.9358
97.1142
48.5384
186243789018495354963918
71.2882
gduggal-snapplatINDELD1_5HG002compoundhet*
46.3272
44.0131
48.8981
72.6225
53856850588061453920
63.7917
mlin-fermikitSNP*map_l100_m1_e0*
72.2095
59.9657
90.7360
51.7425
43417289864340944323924
88.5379
gduggal-snapfbINDEL**homalt
94.4791
93.5105
95.4679
58.3050
117049812311709955593925
70.6062
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.9743
90.3292
93.6805
71.4710
5820062316021540623944
97.0950
mlin-fermikitSNP*map_l100_m2_e0homalt
74.2855
67.9468
81.9285
52.5634
1870188221870141253945
95.6364
qzeng-customINDEL**het
97.1762
98.2811
96.0960
58.8639
190796333721769188443946
44.6178
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
76.9680
69.6854
85.9503
79.9286
44899195325206785113951
46.4223
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.0733
85.0400
87.1320
47.7048
2720647862713940083953
98.6277
mlin-fermikitSNP*map_l100_m2_e0*
72.7370
60.6281
90.8897
55.5979
44843291214483544943956
88.0285
mlin-fermikitSNP*map_l100_m2_e1homalt
74.4467
68.1285
82.0565
52.6294
1893788591893741413961
95.6532
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
51.7623
87.4465
36.7612
44.5578
2452352243841943961
94.4444
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.6668
95.6114
95.7223
68.1753
90304414514827166263965
59.8400
mlin-fermikitSNP*map_l100_m2_e1*
72.9339
60.8681
90.9660
55.6863
45491292464548345173972
87.9345
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.4728
78.5200
62.2951
44.9448
3491955733444393996
90.0203
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.3685
84.7087
86.0387
70.3107
2710048922762144824002
89.2905
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.1720
50.7947
62.8225
45.1920
75107275752344524009
90.0494
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
83.1973
74.7833
93.7446
68.3849
1164939286175841214009
97.2822
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.0207
91.2790
79.5656
57.4207
1626515541597241024011
97.7816
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
54.3279
87.8989
39.3131
46.3121
2782383277042764018
93.9663
ciseli-customSNPtv**
96.5740
98.6920
94.5451
25.2127
95701412684954909550954019
7.2947
anovak-vgINDELI1_5*het
38.2803
26.6836
67.7044
67.2836
210915795025553121894021
32.9888
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
57.8173
89.4447
42.7138
55.6700
3254384323643404025
92.7419
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
80.5008
99.2225
67.7227
54.9332
829565861541064035
98.2708
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
80.5008
99.2225
67.7227
54.9332
829565861541064035
98.2708
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.2088
43.9090
51.0447
54.2294
48666216488646864047
86.3636
jpowers-varprowlINDELI6_15HG002compoundhethet
6.7114
57.6923
3.5629
37.9971
1208815040604050
99.7537
eyeh-varpipeINDELD1_5HG002compoundhet*
54.4680
50.0613
59.7255
65.1711
61256110609241084053
98.6611
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
89.6438
88.9452
90.3535
42.9428
3371241905433558014069
70.1431
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.2884
84.6243
85.9630
70.3947
2707349192745444834096
91.3674
ghariani-varprowlINDELI6_15HG002compoundhethet
7.4887
61.5385
3.9869
41.9228
1288017141184099
99.5386
mlin-fermikitSNPtv*homalt
98.8702
98.8876
98.8528
20.1908
372928419537292343284101
94.7551
qzeng-customINDEL*HG002compoundhet*
82.2978
79.3825
85.4354
55.6867
2378361773641062074106
66.1511
eyeh-varpipeINDELD1_5*homalt
95.4519
99.1150
92.0499
59.2107
484934334844441844111
98.2553
mlin-fermikitSNPtv**
98.7665
98.1308
99.4104
19.3147
9515721812695150656434116
72.9399
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.7149
82.5790
55.9638
44.4510
1332281581845784118
89.9519
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
66.0309
61.2472
71.6250
49.8874
1082368481083442924156
96.8313
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
66.0309
61.2472
71.6250
49.8874
1082368481083442924156
96.8313