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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
85251-85300 / 86044 show all
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
60.7416
67.9902
54.8896
38.6127
22261048375530862432
78.8075
gduggal-snapplatSNP**het
98.7739
98.5851
98.9633
30.9812
1847092265091848114193602442
12.6136
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_11to50*
85.4037
81.6845
89.4777
43.9514
2989067023304538862450
63.0468
anovak-vgINDELI1_5HG002compoundhethomalt
40.4620
88.4498
26.2307
64.1465
29138107130122451
81.3745
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
88.1593
87.4776
88.8518
37.5644
2146730732155127042453
90.7175
mlin-fermikitINDEL*HG002compoundhethomalt
32.9688
92.1283
20.0767
74.2148
6325462825002465
98.6000
jlack-gatkINDEL*HG002compoundhet*
91.0082
90.7410
91.2769
62.3551
2718627742707025872465
95.2841
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
81.2103
79.4781
83.0196
65.6096
1443837281442329502467
83.6271
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
81.2103
79.4781
83.0196
65.6096
1443837281442329502467
83.6271
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
68.2551
91.4186
54.4569
32.9265
52249296324782470
99.6772
ciseli-customINDELI6_15*homalt
49.3008
46.2895
52.7313
38.8345
28883351286725702475
96.3035
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
71.5901
79.0706
65.4026
31.3787
2161572503626642476
92.9429
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
59.9212
54.8636
66.0058
31.4666
51894269519426752487
92.9720
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.5891
93.3138
95.8997
71.5881
6012343086006125682492
97.0405
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.6741
97.8739
73.0725
38.0893
6537142694725602496
97.5000
gduggal-bwafbINDEL*HG002compoundhethomalt
33.7522
95.9184
20.4793
75.1027
6582865825552524
98.7867
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
50.2462
41.8069
62.9545
59.3735
26843736661438922524
64.8510
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
50.2462
41.8069
62.9545
59.3735
26843736661438922524
64.8510
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
47.4578
43.6627
51.9755
51.4637
26563427297327472524
91.8821
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.8755
85.9451
94.1826
54.7512
5616691855545034252525
73.7226
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
51.2986
77.9991
38.2164
61.6156
1723486172727922527
90.5086
anovak-vgINDELD6_15HG002compoundhet*
33.7576
27.6935
43.2221
33.8439
25016530270735562531
71.1755
gduggal-snapvardSNP*HG002complexvar*
97.8941
96.7741
99.0404
21.0357
7300482433670836268632537
36.9663
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
88.2321
85.5737
91.0609
53.6742
2687745312683226342540
96.4313
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
88.2321
85.5737
91.0609
53.6742
2687745312683226342540
96.4313
gduggal-bwavardSNP*HG002compoundhethet
83.4515
85.5762
81.4296
49.6147
1213320451320330112546
84.5566
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
39.2362
37.2842
41.4038
61.8887
22683815233633062550
77.1325
anovak-vgSNP*HG002compoundhethet
78.0560
77.3875
78.7362
46.6128
1097232061232333282553
76.7127
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
88.0966
87.6813
88.5158
38.7217
2151730232158928012559
91.3602
gduggal-bwavardSNP*HG002compoundhet*
84.7137
82.2128
87.3715
45.7405
2122945932099130342565
84.5419
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
67.7487
63.3008
72.8688
42.9423
70154067697525972576
99.1914
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
55.8126
45.6817
71.7174
42.4460
28883434659826022576
99.0008
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
55.8126
45.6817
71.7174
42.4460
28883434659826022576
99.0008
anovak-vgSNPtiHG002compoundhet*
77.8164
75.3290
80.4737
38.3806
1316643121352232812578
78.5736
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.3371
62.5265
80.3777
56.0717
1534491961838844892592
57.7411
ciseli-customSNPtvHG002complexvarhomalt
95.4763
98.8182
92.3530
24.8215
9398711249258376662593
33.8247
gduggal-snapplatINDEL**het
75.6756
70.3729
81.8427
68.5533
13661757516150007332802606
7.8305
mlin-fermikitINDEL*HG002complexvar*
95.4305
94.5346
96.3436
54.3245
7273342057235627462618
95.3387
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5727
82.8140
84.3455
36.4989
1512131381519428202630
93.2624
ciseli-customINDELD1_5HG002complexvar*
84.6887
87.0694
82.4348
57.7103
2848342302818260052638
43.9301
ghariani-varprowlSNP***
99.3496
99.8685
98.8361
25.2137
305057740163051086359302639
7.3448
rpoplin-dv42INDEL***
98.9802
98.7882
99.1728
78.6199
340367417534037028392640
92.9905
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.0167
98.2183
71.8900
39.0410
6560119690026982648
98.1468
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
47.1342
38.1966
61.5321
37.8247
26394270521332592660
81.6201
jpowers-varprowlSNP***
99.5004
99.5447
99.4561
23.3348
3040706139083041157166322670
16.0534
anovak-vgSNP*map_l125_m1_e0het
77.1793
90.4691
67.2939
76.7918
25686270625425123572688
21.7529
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
46.7905
46.8317
46.7493
53.6445
18922148309235222706
76.8313
gduggal-bwafbINDEL**homalt
98.0353
98.2688
97.8029
56.6087
123005216712299127632706
97.9370
jlack-gatkINDEL***
98.6899
98.8138
98.5664
60.1151
340455408734033249502708
54.7071