PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85101-85150 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_l100_m2_e0 | * | 85.1771 | 81.9318 | 88.6900 | 71.8362 | 60600 | 13364 | 60413 | 7704 | 2033 | 26.3889 | |
| gduggal-snapplat | INDEL | D1_5 | * | homalt | 88.9829 | 85.3881 | 92.8936 | 64.0746 | 41777 | 7149 | 49006 | 3749 | 2039 | 54.3878 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | homalt | 93.9842 | 95.4231 | 92.5880 | 51.8445 | 25790 | 1237 | 26070 | 2087 | 2039 | 97.7000 | |
| jpowers-varprowl | INDEL | D16_PLUS | * | het | 70.8402 | 90.6933 | 58.1179 | 67.6572 | 2865 | 294 | 2878 | 2074 | 2042 | 98.4571 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 60.3322 | 92.2485 | 44.8239 | 74.0840 | 1678 | 141 | 1693 | 2084 | 2043 | 98.0326 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 60.3322 | 92.2485 | 44.8239 | 74.0840 | 1678 | 141 | 1693 | 2084 | 2043 | 98.0326 | |
| anovak-vg | SNP | ti | HG002compoundhet | het | 76.5771 | 76.2336 | 76.9238 | 40.2064 | 7246 | 2259 | 8247 | 2474 | 2044 | 82.6192 | |
| gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
| gduggal-snapfb | SNP | * | * | * | 99.2501 | 99.8026 | 98.7037 | 23.6262 | 3048604 | 6030 | 3049548 | 40049 | 2047 | 5.1112 | |
| jpowers-varprowl | SNP | * | HG002compoundhet | * | 90.5976 | 92.3941 | 88.8696 | 48.7204 | 23858 | 1964 | 24057 | 3013 | 2048 | 67.9721 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | * | 85.2411 | 82.0102 | 88.7370 | 71.8319 | 61292 | 13445 | 61099 | 7755 | 2048 | 26.4088 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | homalt | 60.9384 | 52.0130 | 73.5614 | 61.0344 | 6085 | 5614 | 6085 | 2187 | 2050 | 93.7357 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.8074 | 23.6447 | 30.9468 | 56.6057 | 929 | 3000 | 925 | 2064 | 2051 | 99.3702 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 44.0360 | 38.0774 | 52.2053 | 83.4017 | 11606 | 18874 | 14180 | 12982 | 2052 | 15.8065 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 44.0360 | 38.0774 | 52.2053 | 83.4017 | 11606 | 18874 | 14180 | 12982 | 2052 | 15.8065 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 43.5112 | 89.2820 | 28.7648 | 54.7750 | 858 | 103 | 850 | 2105 | 2053 | 97.5297 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | het | 72.5780 | 95.3150 | 58.5993 | 70.3918 | 3011 | 148 | 3029 | 2140 | 2055 | 96.0280 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | * | 57.7918 | 43.6268 | 85.5779 | 66.0006 | 13896 | 17956 | 13891 | 2341 | 2055 | 87.7830 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.2279 | 23.2884 | 30.0166 | 55.4521 | 915 | 3014 | 905 | 2110 | 2058 | 97.5355 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 94.4269 | 92.1672 | 96.8002 | 61.2699 | 87051 | 7398 | 86368 | 2855 | 2059 | 72.1191 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | het | 75.5953 | 89.9876 | 65.1719 | 80.5681 | 17382 | 1934 | 17193 | 9188 | 2064 | 22.4641 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.6774 | 94.4237 | 71.9631 | 77.4935 | 6062 | 358 | 6078 | 2368 | 2066 | 87.2466 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 78.6552 | 86.4019 | 72.1833 | 72.7812 | 5547 | 873 | 5561 | 2143 | 2067 | 96.4536 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 78.6552 | 86.4019 | 72.1833 | 72.7812 | 5547 | 873 | 5561 | 2143 | 2067 | 96.4536 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 81.8009 | 78.9787 | 84.8322 | 50.9671 | 11677 | 3108 | 11678 | 2088 | 2070 | 99.1379 | |
| mlin-fermikit | INDEL | D6_15 | HG002compoundhet | * | 69.7015 | 65.9174 | 73.9466 | 36.0645 | 5953 | 3078 | 5949 | 2096 | 2075 | 98.9981 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | homalt | 61.0704 | 52.1941 | 73.5845 | 61.1854 | 6173 | 5654 | 6173 | 2216 | 2078 | 93.7726 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | * | 57.9744 | 43.8280 | 85.6051 | 66.1929 | 14117 | 18093 | 14112 | 2373 | 2083 | 87.7792 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | het | 24.1644 | 34.9047 | 18.4785 | 71.1703 | 1429 | 2665 | 1727 | 7619 | 2083 | 27.3395 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.1651 | 84.7285 | 77.8894 | 53.1421 | 8067 | 1454 | 8067 | 2290 | 2086 | 91.0917 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 45.9086 | 42.3685 | 50.0943 | 72.1654 | 2118 | 2881 | 2125 | 2117 | 2097 | 99.0553 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 45.9086 | 42.3685 | 50.0943 | 72.1654 | 2118 | 2881 | 2125 | 2117 | 2097 | 99.0553 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 76.2662 | 86.5448 | 68.1700 | 55.3642 | 5255 | 817 | 5230 | 2442 | 2103 | 86.1179 | |
| mlin-fermikit | INDEL | I1_5 | * | het | 97.2425 | 97.2166 | 97.2684 | 53.2963 | 76841 | 2200 | 76701 | 2154 | 2108 | 97.8644 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 47.8508 | 44.9290 | 51.1791 | 74.3426 | 2246 | 2753 | 2257 | 2153 | 2109 | 97.9563 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 47.8508 | 44.9290 | 51.1791 | 74.3426 | 2246 | 2753 | 2257 | 2153 | 2109 | 97.9563 | |
| jpowers-varprowl | INDEL | D16_PLUS | * | * | 60.4248 | 56.9575 | 64.3415 | 68.1361 | 3864 | 2920 | 3874 | 2147 | 2111 | 98.3232 | |
| anovak-vg | SNP | * | map_l100_m0_e0 | het | 78.3081 | 89.0262 | 69.8934 | 77.2580 | 18878 | 2327 | 18693 | 8052 | 2114 | 26.2543 | |
| anovak-vg | SNP | * | map_l150_m1_e0 | * | 79.3251 | 85.8375 | 73.7311 | 78.7422 | 26274 | 4335 | 25974 | 9254 | 2118 | 22.8874 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8081 | 34.5074 | 68.1144 | 30.9514 | 1205 | 2287 | 4548 | 2129 | 2118 | 99.4833 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 80.3927 | 81.2870 | 79.5178 | 59.9939 | 9335 | 2149 | 9333 | 2404 | 2119 | 88.1448 | |
| anovak-vg | SNP | * | map_l150_m2_e0 | het | 75.9821 | 90.0512 | 65.7151 | 81.6508 | 18130 | 2003 | 17933 | 9356 | 2121 | 22.6699 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | * | 61.7015 | 59.1244 | 64.5135 | 70.3568 | 4011 | 2773 | 4025 | 2214 | 2123 | 95.8898 | |
| ghariani-varprowl | INDEL | * | HG002compoundhet | homalt | 33.4304 | 91.1079 | 20.4709 | 62.9558 | 625 | 61 | 626 | 2432 | 2127 | 87.4589 | |
| anovak-vg | SNP | * | HG002complexvar | homalt | 98.2895 | 97.5091 | 99.0824 | 19.5966 | 281387 | 7188 | 273293 | 2531 | 2130 | 84.1565 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | * | 72.7922 | 67.2062 | 79.3909 | 62.5413 | 8304 | 4052 | 8290 | 2152 | 2132 | 99.0706 | |
| anovak-vg | SNP | * | map_l150_m2_e1 | het | 76.0838 | 90.1144 | 65.8336 | 81.6880 | 18350 | 2013 | 18149 | 9419 | 2135 | 22.6669 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.0228 | 69.6517 | 45.4722 | 29.4037 | 420 | 183 | 1868 | 2240 | 2137 | 95.4018 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 45.1124 | 44.6159 | 45.6200 | 29.5676 | 1330 | 1651 | 1880 | 2241 | 2138 | 95.4038 | |