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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
84801-84850 / 86044 show all
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.9555
43.2887
59.0497
58.0143
21642835215014911450
97.2502
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.7981
89.6100
78.6942
72.7931
5468634549614881452
97.5806
jpowers-varprowlSNP*HG002complexvarhomalt
99.6393
99.9463
99.3342
21.7803
28841915528854219341452
75.0776
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
38.6951
60.3306
28.4813
61.2448
58438458714741454
98.6431
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
81.2086
91.0256
73.3029
53.9573
4047399401714631454
99.3848
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
46.3721
79.4421
32.7422
66.7816
76919975715551454
93.5048
gduggal-bwavardSNPtv*het
99.1377
99.1291
99.1462
30.0519
586551515358408950301454
28.9066
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
63.4268
61.9457
64.9805
71.6420
31711948434223401455
62.1795
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.3724
88.2160
27.0230
51.3251
5397254114611457
99.7262
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
31.9171
30.3578
33.6453
67.1740
806184979115601458
93.4615
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
86.6457
91.9827
81.8942
39.7431
6792592676214951459
97.5920
anovak-vgSNP*map_l125_m0_e0*
79.0837
83.3789
75.2094
80.8664
1616332221598252681460
27.7145
gduggal-snapplatINDEL*HG002complexvar*
75.2674
67.2243
85.4968
64.1998
51721252175592694871463
15.4211
jmaeng-gatkINDEL*HG002compoundhet*
93.6190
92.3632
94.9094
62.9257
2767222882755614781464
99.0528
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.5291
86.9258
88.1409
52.6080
1934129092014927111465
54.0391
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.8694
96.4285
97.3143
66.9705
6301723346279517331467
84.6509
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.8694
96.4285
97.3143
66.9705
6301723346279517331467
84.6509
mlin-fermikitINDELD1_5HG002compoundhethet
59.9144
80.4398
47.7343
63.4097
1390338138015111467
97.0880
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.6051
97.9373
87.8236
56.1886
110632331146815901468
92.3270
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
24.2608
21.2264
28.3074
52.9088
585217158214741470
99.7286
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50het
81.8190
98.1137
70.1659
50.3295
358969359615291471
96.2067
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.8170
96.5624
74.0438
56.3581
3736133425914931471
98.5265
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50het
92.5067
90.7170
94.3684
38.1735
1429714632577215381472
95.7087
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50het
79.4844
92.6189
69.6125
45.3619
3388270339514821473
99.3927
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.7796
92.4607
83.5496
48.0211
7763633772515211474
96.9099
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
40.7774
89.1980
26.4300
49.8268
5456653614921475
98.8606
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
23.7409
20.8999
27.4757
50.6350
576218056614941477
98.8621
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
25.8333
23.3145
28.9623
64.4415
619203661415061481
98.3400
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.2372
96.7836
76.1521
58.2609
4303143482515111481
98.0146
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
50.5167
46.3701
55.4778
71.4813
58066715729258521482
25.3247
ciseli-customSNP*map_l125_m1_e0*
80.8628
76.5085
85.7426
76.0516
34679106483461057551482
25.7515
rpoplin-dv42INDEL*HG002compoundhethet
81.4607
94.3576
71.6654
76.0047
3863231380415041483
98.6037
jpowers-varprowlINDELI16_PLUS*het
66.0542
76.3061
58.2307
60.8634
2074644208014921486
99.5979
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
49.8073
85.3306
35.1672
63.7131
82614283115321487
97.0627
mlin-fermikitINDELI1_5HG002compoundhethet
38.7440
70.5882
26.6993
68.3093
60025054614991487
99.1995
anovak-vgINDELI6_15HG002compoundhet*
31.2822
22.7666
49.9744
31.5356
19986778195419561488
76.0736
gduggal-snapvardSNPtiHG002compoundhet*
79.9822
79.9565
80.0079
49.1293
1397435031416335391489
42.0740
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.7504
71.1059
88.2367
41.6720
1051342721133415111493
98.8087
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
64.1957
56.1798
74.8799
61.8437
47003666607820391497
73.4183
ciseli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
35.0447
30.4403
41.2903
53.1797
11962733121617291499
86.6975
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
77.4749
88.1419
69.1110
56.7739
5887792625827971501
53.6646
jlack-gatkINDEL*HG002compoundhethomalt
47.4306
99.5627
31.1304
79.5488
683368315111501
99.3382
ghariani-varprowlINDELI16_PLUS*het
73.3265
90.1398
61.7994
65.3970
2450268245915201502
98.8158
raldana-dualsentieonINDEL*HG002compoundhet*
92.3506
90.1368
94.6759
61.0439
2700529552688715121502
99.3386
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
85.1837
88.4652
82.1369
53.6130
7401965740316101503
93.3540
ciseli-customINDELD16_PLUS**
59.6718
52.7860
68.6237
57.6195
35813203356516301503
92.2086
mlin-fermikitINDELD6_15HG002compoundhethet
44.7280
80.2570
31.0032
43.1484
68716968315201507
99.1447
eyeh-varpipeINDELI1_5*het
97.6534
97.4342
97.8735
52.4121
7701320287690916711507
90.1855
dgrover-gatkINDEL***
99.4009
99.3458
99.4561
60.2776
342288225434215418711513
80.8658