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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
84501-84550 / 86044 show all
gduggal-snapplatSNP*map_l100_m2_e1*
95.5097
94.0511
97.0142
77.3448
7029144467031221641091
50.4159
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
77.2126
92.3546
66.3363
73.7008
2271188227611551093
94.6320
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.7828
89.8112
93.8428
47.3895
1998322672072813601094
80.4412
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
75.6587
80.6700
71.2335
62.4381
3034727297412011094
91.0908
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
75.6587
80.6700
71.2335
62.4381
3034727297412011094
91.0908
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
58.2603
63.0693
54.1327
69.0970
25481492279023641096
46.3621
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200*
25.2937
22.4179
29.0158
55.9542
471163051312551101
87.7291
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.2752
94.6742
95.8839
71.5291
4326824344328218581107
59.5802
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.2752
94.6742
95.8839
71.5291
4326824344328218581107
59.5802
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9862
97.5782
92.5283
63.5798
142633541413011411110
97.2831
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
37.9373
39.6694
36.3501
63.2242
38458497617091112
65.0673
anovak-vgINDELI16_PLUS**
32.9342
25.0588
48.0286
39.2493
15984779154716741112
66.4277
egarrison-hhgaINDEL*HG002complexvar*
97.4540
96.9352
97.9784
67.1267
7458023587454115381113
72.3667
gduggal-bwaplatSNP**het
98.8209
98.1336
99.5179
30.8495
183861934968183950089121113
12.4888
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
70.5032
65.2830
76.6308
62.2986
67943613841125651113
43.3918
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
28.1855
22.9755
36.4514
63.8922
610204598217121115
65.1285
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
55.0866
65.0355
47.7778
51.5804
917493137615041123
74.6676
ghariani-varprowlSNPtvHG002compoundhethomalt
83.7163
99.8524
72.0698
50.4793
33835338813131124
85.6055
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
86.6613
87.3341
85.9988
44.9670
1203917461321221511124
52.2548
ciseli-customSNP*map_l150_m1_e0*
77.9234
73.3052
83.1626
80.2472
2243881712240445361124
24.7795
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
67.2347
77.6447
59.2860
62.9451
43451251468332161125
34.9813
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50het
91.9145
93.3439
90.5282
50.5104
1471110491400214651126
76.8601
jpowers-varprowlSNPtvHG002compoundhethomalt
83.3558
99.8524
71.5372
51.1753
33835338813481126
83.5312
jpowers-varprowlINDELD1_5HG002complexvarhet
95.6155
96.8360
94.4254
57.0236
201086572007211851127
95.1055
ghariani-varprowlINDELD1_5HG002complexvarhet
95.4621
98.5649
92.5488
58.7032
204672982040716431130
68.7766
ghariani-varprowlSNPtvHG002compoundhet*
76.9891
85.1395
70.2629
63.5595
75971326772432691134
34.6895
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
72.6802
97.7039
57.8610
56.5116
161738162311821138
96.2775
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
58.2911
54.3260
62.8805
55.6252
20031684200411831139
96.2806
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
70.4680
75.1615
66.3261
61.3642
2908961324616481139
69.1141
anovak-vgINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
70.9064
96.1777
56.1521
58.9971
93137150611761140
96.9388
ciseli-customSNP*map_l100_m0_e0*
81.1632
76.8673
85.9677
74.4366
2524475972519841131141
27.7413
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50het
75.1577
77.7747
72.7110
36.3946
2845813407415291142
74.6893
anovak-vgSNP*HG002compoundhethomalt
80.7165
80.5695
80.8640
38.2684
86872095797418871143
60.5723
jpowers-varprowlSNPtvHG002compoundhet*
83.9956
84.7697
83.2355
57.3909
75641359766115431144
74.1413
rpoplin-dv42INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.4841
98.2647
98.7045
79.6128
9281016399279712181144
93.9245
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.2372
87.9811
86.5058
47.3544
1300817771419322141144
51.6712
mlin-fermikitSNPtimap_l150_m1_e0homalt
60.2226
50.2115
75.2198
56.9340
36793648367912121145
94.4719
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
92.9005
92.0300
93.7875
53.5986
1827915831826712101145
94.6281
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
33.8729
24.3264
55.7519
39.1474
9482949173513771147
83.2970
mlin-fermikitSNPtimap_l150_m1_e0*
56.8574
42.3346
86.5470
60.8408
834511367834412971150
88.6662
ndellapenna-hhgaINDEL*HG002complexvar*
97.2866
96.6882
97.8924
67.2163
7439025487436316011150
71.8301
ciseli-customSNP*map_l150_m2_e0*
78.3493
73.8101
83.4833
81.5713
2351083422347346441150
24.7631
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.2874
71.9726
85.8170
51.6431
79763106812013421151
85.7675
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
48.9137
52.6535
45.6699
40.6819
506455117613991152
82.3445
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
34.3818
27.5134
45.8204
41.0718
10812848118414001153
82.3571
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
87.8316
82.7461
93.5831
40.4184
1209525221790912281155
94.0554
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.0761
71.5124
85.9666
51.3057
79253157803113111160
88.4821
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
88.0705
92.7235
83.8622
38.1946
6193486618411901162
97.6471
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.5056
97.7103
93.3982
67.8398
174114081727412211162
95.1679
ciseli-customSNP*map_l150_m2_e1*
78.3942
73.8684
83.5109
81.5923
2379384172375346901163
24.7974