PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
84401-84450 / 86044 show all
raldana-dualsentieonINDEL**homalt
99.5287
99.8738
99.1860
57.6626
12501415812502310261009
98.3431
gduggal-snapvardINDELD1_5*homalt
90.7791
84.7811
97.6903
44.1687
4148074464411510431010
96.8360
mlin-fermikitSNPtvmap_l100_m0_e0*
58.6013
45.6875
81.6920
55.0247
50646020506011341011
89.1534
mlin-fermikitSNPtvmap_l100_m0_e0homalt
61.5471
56.9943
66.8904
49.7701
21921654219210851011
93.1797
gduggal-snapvardSNPtvHG002complexvar*
97.7872
96.7504
98.8464
23.7234
238156799923305727201012
37.2059
hfeng-pmm2INDEL***
99.3119
99.0152
99.6103
57.8578
341149339334101513341012
75.8621
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.3330
45.2682
59.2743
64.1063
16121949160111001012
92.0000
ciseli-customSNP*map_l150_m1_e0homalt
86.3052
84.4052
88.2927
70.7708
95151758949512591014
80.5401
jpowers-varprowlSNPti*homalt
99.8713
99.9620
99.7807
18.3988
80273330580278417641014
57.4830
ghariani-varprowlSNPti*homalt
99.8530
99.9608
99.7455
17.9110
80272031580276920481014
49.5117
gduggal-bwafbINDEL*HG002complexvar*
96.4189
94.4813
98.4377
54.9407
7269242467428911791015
86.0899
jpowers-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
39.6215
29.5446
60.1302
69.5829
15703744157010411015
97.5024
ciseli-customINDEL*map_siren*
74.2881
71.4035
77.4156
83.7506
52912119529615451017
65.8252
ckim-isaacINDEL*HG002complexvarhet
92.2376
90.0654
94.5171
48.6355
4162145914002823221017
43.7984
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
77.1877
70.6598
85.0445
46.2575
66832775678411931020
85.4987
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.7321
22.6516
58.9793
55.7780
15655344153710691020
95.4163
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
68.4389
86.7948
56.4917
55.1969
1400213138810691020
95.4163
anovak-vgSNPtvmap_l125_m1_e0het
77.0260
91.5169
66.4968
76.6933
9267859926546681021
21.8723
anovak-vgINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
30.5317
23.4920
43.5957
47.5189
923300693612111021
84.3105
ndellapenna-hhgaINDEL**homalt
98.8395
98.9790
98.7005
54.9139
123894127812387716311021
62.5996
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.0202
94.4334
91.6486
40.7109
89915301186310811022
94.5421
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
40.2067
39.4727
40.9685
65.1113
10481607106615361023
66.6016
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
61.0689
88.2353
46.6928
58.7927
96012895310881026
94.3015
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
77.1982
70.9029
84.7203
46.8070
67062752683112321026
83.2792
gduggal-snapplatSNPtv**
98.6169
98.1754
99.0623
31.7051
9520051769395236890151026
11.3810
anovak-vgINDELI1_5map_siren*
58.1927
58.9351
57.4687
78.9889
17711234178913241029
77.7190
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.2830
86.8621
93.9845
38.9075
1087616451660810631029
96.8015
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
58.3043
52.2088
66.0112
56.8516
20801904224911581030
88.9465
anovak-vgSNPtvHG002compoundhethet
77.7767
79.7346
75.9127
53.8008
3726947434613791030
74.6918
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
30.6992
20.9726
57.2507
58.7917
14495460144110761033
96.0037
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.5569
94.9365
90.2936
47.5778
118876341125612101034
85.4545
ciseli-customSNP*map_l150_m2_e0homalt
86.5638
84.7166
88.4932
73.1740
99111788989012861036
80.5599
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
92.0469
94.0521
90.1255
39.8201
9788619976610701036
96.8224
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
34.4349
24.2003
59.6699
64.4061
16725237166311241036
92.1708
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200het
34.5477
35.3061
33.8212
42.2578
17331764712661039
82.0695
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1444
17.6107
33.7493
43.2911
370173164912741040
81.6327
ciseli-customSNP*map_l100_m0_e0homalt
87.9778
87.2289
88.7396
61.6447
1013614841010312821041
81.2012
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50*
76.5465
76.6078
76.4854
46.7535
51581575516215871041
65.5955
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
90.6005
89.5230
91.7043
43.8461
1634619131707915451043
67.5081
anovak-vgSNPtvmap_l125_m2_e0het
77.3239
91.5342
66.9329
78.0559
9558884955447201043
22.0975
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.4075
95.0192
91.8496
49.4485
109125721385012291043
84.8657
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
32.2728
22.6804
55.9262
35.3818
7922700157612421045
84.1385
gduggal-snapvardSNPtvHG002compoundhethet
75.6689
85.2771
68.0065
62.2530
3985688458521571046
48.4933
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0468
96.6402
77.5463
56.5992
3164110372310781046
97.0315
ciseli-customSNP*map_l150_m2_e1homalt
86.5594
84.7045
88.4973
73.1841
100181809999412991047
80.6005
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.6118
96.7950
81.7043
50.5663
4953164495711101047
94.3243
anovak-vgSNPtvmap_l125_m2_e1het
77.4408
91.5759
67.0858
78.0971
9664889965747381048
22.1190
qzeng-customINDELD1_5*het
98.6409
98.8844
98.3986
58.7330
865979779610315641050
67.1355