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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
84301-84350 / 86044 show all
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
gduggal-snapplatSNP*map_l125_m1_e0*
93.8560
91.8106
95.9947
80.5503
416153712416301737931
53.5982
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.1971
91.6616
76.1638
51.6125
30012732994937932
99.4664
anovak-vgSNPtimap_l125_m0_e0*
79.1475
83.1766
75.4908
80.4095
106152147105373421933
27.2727
anovak-vgSNP*map_l150_m0_e0het
75.3571
86.4106
66.8109
87.0439
6861107967963376934
27.6659
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.9516
98.5298
89.7799
55.6361
82431238240938934
99.5736
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.5282
97.7986
91.4694
41.2757
1012922810122944934
98.9407
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
39.3470
36.3683
42.8571
67.0539
7031230705940934
99.3617
ciseli-customINDELD6_15HG002compoundhethet
21.2896
17.8947
26.2741
51.2425
1537025311490935
62.7517
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.7441
38.0238
43.8836
68.6231
7351198739945935
98.9418
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
84.5297
95.6092
75.7515
51.0570
26131202999960935
97.3958
gduggal-snapfbINDELI1_5HG002compoundhethomalt
37.2562
91.1854
23.4106
77.1726
300293131024936
91.4062
ciseli-customSNP**het
97.1375
98.3979
95.9090
22.9747
184358430017183723578367939
1.1982
jpowers-varprowlINDELI1_5HG002compoundhethomalt
36.7720
93.9210
22.8614
60.8545
309203101046940
89.8662
gduggal-bwavardINDELD6_15HG002complexvarhet
83.6960
96.5705
73.8504
58.8480
301310729231035940
90.8213
jmaeng-gatkINDEL**homalt
99.5485
99.8690
99.2301
59.0290
125008164125021970941
97.0103
gduggal-snapplatSNP*map_l125_m2_e0*
93.9886
91.9975
96.0678
81.8481
429843739429991760941
53.4659
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5916
75.6355
56.3620
56.7025
12203931227950942
99.1579
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
48.1828
41.3707
57.6805
50.9762
132818821318967944
97.6215
gduggal-snapplatSNP*map_l125_m2_e1*
94.0312
92.0554
96.0937
81.8790
434523750434681767944
53.4239
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
55.0165
87.3144
40.1609
56.7914
64794649967945
97.7249
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1482
96.8620
93.4939
39.6090
10032325149021037946
91.2247
anovak-vgINDELI1_5map_sirenhomalt
68.1692
93.3993
53.6710
71.9974
1132801155997947
94.9850
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.3875
89.5226
59.3622
63.3723
14441691452994947
95.2716
jpowers-varprowlINDELI1_5*homalt
94.7762
91.6661
98.1046
39.3198
553925036553321069948
88.6810
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4130
97.1455
97.6820
62.4233
42098123741887994949
95.4728
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
41.1142
35.4136
49.0020
38.2625
97617809821022950
92.9550
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
77.5015
89.8990
68.1090
63.2249
19582202125995950
95.4774
jli-customINDEL***
99.3675
99.0788
99.6580
57.6935
34136831743412131171951
81.2126
gduggal-bwavardINDELD6_15HG002complexvar*
76.1590
74.2173
78.2051
56.8522
3935136737821054954
90.5123
asubramanian-gatkINDEL**homalt
99.2686
99.5207
99.0178
58.9491
1245726001245991236954
77.1845
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.7984
28.7018
41.0959
58.9386
6921719690989957
96.7644
anovak-vgSNP*map_l150_m0_e0*
77.8146
81.9066
74.1121
85.6738
9855217797453404959
28.1727
qzeng-customINDELD6_15HG002compoundhet*
81.7565
82.9255
80.6200
31.3934
7489154285822063963
46.6796
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
77.3354
79.2618
75.5004
55.1018
29857812980967964
99.6898
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.4169
95.5954
72.4316
76.0055
4368920134398716742965
5.7640
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
49.3606
38.1496
69.9029
67.8340
3208520130241302965
74.1167
ciseli-customSNPtimap_l125_m1_e0*
81.8023
77.7842
86.2580
75.7269
228186517227983632966
26.5969
jpowers-varprowlINDELD6_15HG002complexvar*
74.6372
70.9355
78.7466
57.5873
3761154137571014966
95.2663
eyeh-varpipeINDEL*HG002compoundhethet
65.1467
80.9233
54.5181
69.0092
331378112671057968
91.5799
ghariani-varprowlINDELD6_15HG002complexvar*
76.3894
73.9155
79.0345
58.8274
3919138339131038969
93.3526
gduggal-bwafbINDELI6_15**
87.8626
81.3399
95.5225
40.4474
20191463221206994970
97.5855
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
91.6563
86.8570
97.0171
59.4271
264744006429971322971
73.4493
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
91.6563
86.8570
97.0171
59.4271
264744006429971322971
73.4493
ciseli-customSNP*HG002compoundhethomalt
82.3846
93.4613
73.6552
42.1506
10077705100373590971
27.0474