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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
84151-84200 / 86044 show all
anovak-vgINDELD1_5HG002complexvarhet
92.0015
90.8693
93.1622
52.9821
188691896195651436834
58.0780
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0302
97.5303
98.5353
67.8515
63737161463506944836
88.5593
mlin-fermikitINDELD1_5HG002complexvar*
96.3667
95.5494
97.1980
54.2316
31259145631081896836
93.3036
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.6329
89.7120
95.7505
61.0009
14423165421721964836
86.7220
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.6329
89.7120
95.7505
61.0009
14423165421721964836
86.7220
egarrison-hhgaINDEL**homalt
98.9696
99.0301
98.9091
55.3233
12395812141239391367838
61.3021
anovak-vgSNPtvmap_l150_m2_e0*
79.2839
86.0062
73.5363
80.1925
9766158997593512838
23.8610
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.7408
91.6287
98.0717
68.7918
142731304540621063839
78.9276
gduggal-bwaplatINDEL**het
92.4727
86.8430
98.8829
67.5454
168591255421685401904839
44.0651
anovak-vgINDELD1_5HG002complexvarhomalt
92.9611
95.2727
90.7590
57.9711
10097501102241041840
80.6916
mlin-fermikitSNPtvmap_l150_m1_e0*
56.0020
42.3295
82.7209
62.1223
461962934615964841
87.2407
mlin-fermikitSNPtvmap_l150_m1_e0homalt
59.5283
52.1287
69.3761
55.9108
205718892057908841
92.6211
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.4338
76.9090
68.4508
62.7083
251875627881285845
65.7588
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
34.1360
27.5399
44.8870
36.7812
75919978341024846
82.6172
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
49.3741
54.9918
44.7978
36.5595
3362758311024846
82.6172
anovak-vgSNPtvmap_l150_m2_e1*
79.4082
86.0633
73.7085
80.2069
9899160398883527846
23.9864
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
62.4926
91.1184
47.5533
63.3312
83181826911847
92.9748
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.2062
93.5907
90.8621
57.8426
10572724105501061847
79.8303
ckim-isaacSNP*HG002complexvar*
95.9550
92.3552
99.8467
16.9098
696714576716970671070847
79.1589
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2824
98.0398
98.5261
67.2886
64070128163840955849
88.9005
gduggal-snapvardINDELI16_PLUS*het
3.9257
2.0603
41.4818
51.0283
56266210471477850
57.5491
gduggal-snapplatINDELI1_5HG002compoundhet*
48.1810
42.2143
56.1120
77.8637
5216714054124233851
20.1039
qzeng-customINDELI1_5*het
98.4046
98.3920
98.4173
59.0408
777701271826391329852
64.1084
gduggal-snapplatSNPtimap_siren*
97.1306
96.0829
98.2013
65.7243
964243931964731767855
48.3871
dgrover-gatkINDEL*HG002compoundhethomalt
61.4004
99.7085
44.3580
85.1072
6842684858856
99.7669
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
60.2687
57.5149
63.2995
49.8576
2120156621181228856
69.7068
qzeng-customINDELD1_5HG002compoundhet*
88.1713
85.4271
91.0977
64.3947
104521783115021124856
76.1566
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.5672
91.1998
86.0824
76.7383
178561723183392965857
28.9039
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
94.5094
94.1647
94.8565
75.2918
187031159187741018858
84.2829
ghariani-varprowlINDEL*HG002complexvarhomalt
94.5817
93.8099
95.3663
48.0723
253541673252531227858
69.9267
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_11to50het
86.5531
82.3858
91.1644
45.8288
129842776215542089859
41.1202
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5003
97.0335
90.2153
59.9508
81122488086877859
97.9475
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.5003
97.0335
90.2153
59.9508
81122488086877859
97.9475
eyeh-varpipeINDELD6_15*het
91.9882
92.1325
91.8444
46.7075
1068091210079895860
96.0894
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.8517
89.6171
61.3706
74.5275
13811601406885863
97.5141
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
73.8753
73.0416
74.7283
69.3443
3739138038501302863
66.2826
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
47.8556
54.0432
42.9393
43.9068
675574672893863
96.6405
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
47.8556
54.0432
42.9393
43.9068
675574672893863
96.6405
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
52.0287
92.5996
36.1780
66.6261
48839496875863
98.6286
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.1783
40.0414
46.8485
64.6530
7741159773877864
98.5177
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
35.7126
30.6097
42.8571
50.7598
73816738611148864
75.2613
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
82.4109
89.4163
76.4235
49.0835
327838832481002864
86.2275
eyeh-varpipeINDELD16_PLUS*homalt
49.8532
50.8274
48.9155
43.2091
860832857895865
96.6480