PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83701-83750 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | * | * | 82.9403 | 77.8109 | 88.7937 | 66.6528 | 4962 | 1415 | 4976 | 628 | 607 | 96.6561 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | homalt | 49.1644 | 93.9210 | 33.2972 | 76.0021 | 309 | 20 | 307 | 615 | 607 | 98.6992 | |
| gduggal-bwafb | INDEL | D6_15 | * | homalt | 94.1794 | 97.6288 | 90.9654 | 58.3129 | 6176 | 150 | 6172 | 613 | 608 | 99.1843 | |
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | het | 43.7639 | 83.8785 | 29.6053 | 44.9275 | 718 | 138 | 270 | 642 | 608 | 94.7040 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 69.3130 | 73.8369 | 65.3114 | 41.5571 | 1222 | 433 | 1510 | 802 | 609 | 75.9352 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 56.3122 | 94.1558 | 40.1678 | 59.0614 | 435 | 27 | 431 | 642 | 610 | 95.0156 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | * | 77.7546 | 81.7199 | 74.1564 | 85.3644 | 6424 | 1437 | 6373 | 2221 | 611 | 27.5101 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | het | 83.6399 | 73.7567 | 96.5816 | 86.1149 | 20941 | 7451 | 20766 | 735 | 611 | 83.1293 | |
| raldana-dualsentieon | INDEL | * | * | het | 99.3035 | 99.0228 | 99.5858 | 57.9096 | 192236 | 1897 | 191867 | 798 | 611 | 76.5664 | |
| gduggal-bwaplat | INDEL | D1_5 | * | * | 93.7723 | 88.9284 | 99.1742 | 65.9734 | 130498 | 16247 | 130430 | 1086 | 611 | 56.2615 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.3938 | 89.4378 | 95.5519 | 45.2869 | 12329 | 1456 | 13383 | 623 | 612 | 98.2343 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | * | 80.7203 | 69.2737 | 96.6985 | 86.4603 | 21204 | 9405 | 20971 | 716 | 612 | 85.4749 | |
| qzeng-custom | SNP | * | map_l125_m2_e0 | het | 84.0186 | 74.3127 | 96.6407 | 86.6277 | 21787 | 7531 | 21605 | 751 | 614 | 81.7577 | |
| ciseli-custom | INDEL | I1_5 | map_siren | * | 68.4975 | 64.7920 | 72.6525 | 80.4862 | 1947 | 1058 | 1942 | 731 | 614 | 83.9945 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| jmaeng-gatk | INDEL | * | * | het | 99.3015 | 99.4880 | 99.1156 | 62.5254 | 193139 | 994 | 192770 | 1720 | 614 | 35.6977 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | het | 84.1292 | 74.4636 | 96.6784 | 86.6172 | 22071 | 7569 | 21888 | 752 | 615 | 81.7819 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | homalt | 46.3350 | 95.8763 | 30.5495 | 82.2716 | 279 | 12 | 278 | 632 | 615 | 97.3101 | |
| gduggal-bwafb | INDEL | I1_5 | * | homalt | 98.8253 | 98.7076 | 98.9433 | 52.6434 | 59647 | 781 | 59646 | 637 | 616 | 96.7033 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 83.5750 | 73.9861 | 96.0194 | 60.2412 | 27073 | 9519 | 27065 | 1122 | 616 | 54.9020 | |
| anovak-vg | SNP | tv | HG002compoundhet | homalt | 77.3553 | 84.3861 | 71.4060 | 43.1411 | 2859 | 529 | 2717 | 1088 | 616 | 56.6176 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 40.9601 | 29.3830 | 67.5918 | 54.6739 | 1743 | 4189 | 1583 | 759 | 616 | 81.1594 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.7791 | 28.9773 | 35.1807 | 45.7989 | 357 | 875 | 438 | 807 | 617 | 76.4560 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.5092 | 75.5024 | 90.9494 | 56.1947 | 6349 | 2060 | 6351 | 632 | 617 | 97.6266 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.9555 | 67.4217 | 79.4788 | 54.5797 | 2649 | 1280 | 2684 | 693 | 618 | 89.1775 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 83.4557 | 90.3376 | 77.5481 | 56.6986 | 2141 | 229 | 2138 | 619 | 618 | 99.8384 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 77.1166 | 84.3061 | 71.0570 | 69.6058 | 1300 | 242 | 2131 | 868 | 620 | 71.4286 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | * | 96.8640 | 96.8959 | 96.8321 | 72.7854 | 43920 | 1407 | 43924 | 1437 | 620 | 43.1454 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.6959 | 90.9333 | 82.8358 | 66.4682 | 2728 | 272 | 3219 | 667 | 620 | 92.9535 | |
| qzeng-custom | SNP | * | map_l150_m2_e0 | * | 81.2952 | 70.0678 | 96.8072 | 87.0114 | 22318 | 9534 | 22073 | 728 | 620 | 85.1648 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3834 | 85.1240 | 54.4056 | 66.7982 | 824 | 144 | 778 | 652 | 621 | 95.2454 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.5694 | 95.6738 | 68.1055 | 61.1370 | 1349 | 61 | 1420 | 665 | 621 | 93.3835 | |
| cchapple-custom | INDEL | * | HG002compoundhet | het | 96.8882 | 95.2125 | 98.6240 | 55.6229 | 3898 | 196 | 50675 | 707 | 621 | 87.8359 | |
| ciseli-custom | SNP | * | HG002complexvar | het | 95.7970 | 95.7987 | 95.7952 | 20.3525 | 445943 | 19557 | 439539 | 19293 | 621 | 3.2188 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.7484 | 92.8627 | 96.7122 | 44.0182 | 19126 | 1470 | 19885 | 676 | 622 | 92.0118 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.1748 | 98.3088 | 86.7613 | 48.1654 | 3604 | 62 | 4155 | 634 | 622 | 98.1073 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.8577 | 98.4881 | 99.2301 | 73.8561 | 93021 | 1428 | 92930 | 721 | 622 | 86.2691 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | * | 96.9292 | 96.9758 | 96.8828 | 74.5886 | 45310 | 1413 | 45314 | 1458 | 623 | 42.7298 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | * | 96.9532 | 97.0065 | 96.9000 | 74.6410 | 45789 | 1413 | 45793 | 1465 | 623 | 42.5256 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | homalt | 89.0533 | 87.6147 | 90.5399 | 62.3935 | 7923 | 1120 | 7915 | 827 | 623 | 75.3325 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.9415 | 78.6340 | 61.3762 | 40.0333 | 449 | 122 | 1106 | 696 | 623 | 89.5115 | |
| bgallagher-sentieon | INDEL | * | * | het | 99.5620 | 99.6441 | 99.4801 | 60.4341 | 193442 | 691 | 193072 | 1009 | 623 | 61.7443 | |
| mlin-fermikit | INDEL | D16_PLUS | * | * | 87.3801 | 85.9375 | 88.8720 | 69.7132 | 5830 | 954 | 5846 | 732 | 623 | 85.1093 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.0771 | 33.9479 | 88.5320 | 66.3182 | 5671 | 11034 | 5705 | 739 | 624 | 84.4384 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.0771 | 33.9479 | 88.5320 | 66.3182 | 5671 | 11034 | 5705 | 739 | 624 | 84.4384 | |
| jlack-gatk | INDEL | I6_15 | * | * | 96.1308 | 95.2745 | 97.0025 | 53.1865 | 23650 | 1173 | 23656 | 731 | 625 | 85.4993 | |