PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
83451-83500 / 86044 show all
ciseli-customSNPtvHG002compoundhet*
66.9226
84.5568
55.3744
51.6390
7545137875736103515
8.4385
gduggal-snapplatINDELI1_5*hetalt
55.9163
41.4113
86.0603
83.9805
463665594655754516
68.4350
ltrigg-rtg2INDEL***
99.2539
98.8759
99.6347
56.1284
34066838733404111248516
41.3462
ciseli-customINDELI1_5map_sirenhet
73.5105
78.9411
68.7790
81.4258
13273541335606517
85.3135
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
22.4034
18.2049
29.1188
44.6643
215966228555520
93.6937
qzeng-customSNPti*het
99.4567
99.1981
99.7166
23.5601
12716181027912696813608520
14.4124
raldana-dualsentieonINDEL*HG002compoundhethet
83.9323
82.2912
85.6402
78.9688
33697253137526520
98.8593
ciseli-customSNPtvmap_l125_m1_e0*
79.1043
74.1571
84.7587
76.7783
118774139118732135521
24.4028
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.4868
81.5589
85.5080
68.6930
33177503316562522
92.8826
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
58.5210
78.7755
46.5517
55.0388
386104459527522
99.0512
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
83.3290
92.2710
75.9669
53.2043
619651962461976523
26.4676
gduggal-snapfbSNPtimap_siren*
98.5881
98.6618
98.5145
58.3905
990121343990141493523
35.0301
gduggal-snapvardSNP*map_sirenhet
95.1967
96.5469
93.8838
69.6200
878493142867435651524
9.2727
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.0231
94.1723
93.8743
38.5973
1519948260539525
97.4026
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
53.7560
79.3033
40.6582
61.4881
387101383559525
93.9177
ciseli-customINDELI16_PLUS**
18.6757
11.2906
53.9910
75.8984
7205657717611525
85.9247
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.8037
98.1533
89.8233
81.9505
44858844449975098525
10.2982
gduggal-snapplatSNPtvHG002complexvarhet
96.9038
96.2928
97.5225
28.0304
14514655881455273697526
14.2278
gduggal-snapfbSNP*map_l150_m1_e0*
96.2111
96.1025
96.3199
76.8067
294161193294191124527
46.8861
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-bwafbINDEL*HG002compoundhethet
91.2904
85.5154
97.9020
36.8528
350159330518654528
80.7339
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.9671
94.1821
95.7654
49.5027
1298380212981574528
91.9861
anovak-vgSNPtvmap_l125_m0_e0het
76.8817
88.8434
67.7587
83.1340
391049139091860528
28.3871
bgallagher-sentieonINDEL*HG002compoundhethet
92.6752
98.3879
87.5896
79.6233
4028663790537528
98.3240
gduggal-snapfbSNP*map_l150_m2_e0*
96.3250
96.2326
96.4176
78.3427
306521200306551139529
46.4442
gduggal-snapfbSNPtvHG002complexvar*
98.7938
99.5787
98.0211
25.3464
24511810372454404955529
10.6761
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2520
97.4920
99.0239
63.2840
63712163963508626529
84.5048
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
58.8404
78.7365
46.9711
49.1951
511138504569529
92.9701
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
34.9475
95.6522
21.3793
16.5708
1547155570530
92.9825
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.2407
94.4809
96.0129
51.7704
1396981613967580530
91.3793
ciseli-customINDEL*map_l100_m2_e1*
70.6710
66.2407
75.7364
88.0952
248812682494799531
66.4581
gduggal-snapfbSNP*map_l150_m2_e1*
96.3459
96.2620
96.4300
78.3975
310061204310091148531
46.2544
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
46.0118
32.0942
81.2424
56.6189
268556812681619531
85.7835
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200het
38.5511
68.5714
26.8126
57.5000
336154196535531
99.2523
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
59.5098
45.1054
87.4307
85.0479
419351034257612532
86.9281
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.6050
50.5432
64.3189
53.8060
977956968537532
99.0689
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
90.9626
99.2511
83.9517
58.3543
2783212783532532
100.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
57.4634
56.6917
58.2564
53.1385
7545761009723533
73.7206
ckim-dragenSNP***
99.8268
99.9524
99.7015
21.8489
3053166145330537319143533
5.8296
jpowers-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.7629
99.8762
95.7372
62.6774
201742520213900534
59.3333
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
55.0422
49.2827
62.3260
55.4966
116812021254758535
70.5805
eyeh-varpipeINDELD1_5HG002complexvarhomalt
96.8706
98.8677
94.9525
54.3549
1047812010196542535
98.7085
jli-customINDEL**homalt
99.7041
99.8538
99.5548
57.2311
124989183124999559535
95.7066
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.8171
94.6358
94.9992
46.8433
1123863711246592535
90.3716
gduggal-snapplatSNP*map_l125_m0_e0het
91.0262
89.8926
92.1888
87.3834
11384128011389965535
55.4404
ghariani-varprowlSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8360
99.8663
95.8865
61.2690
201722720210867535
61.7070