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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
83401-83450 / 86044 show all
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
56.3704
41.2427
89.0242
57.5472
458065254607568500
88.0282
hfeng-pmm1INDEL**homalt
99.6836
99.7787
99.5886
55.4406
124895277124903516501
97.0930
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
88.1251
98.2495
79.8925
44.0994
2245402229561501
89.3048
mlin-fermikitSNP*map_l250_m2_e1*
47.5699
33.4544
82.2913
80.2109
267253152672575501
87.1304
rpoplin-dv42INDELD6_15**
97.4536
96.9493
97.9633
52.8335
2529679625300526501
95.2471
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
59.8228
58.1169
61.6319
75.6941
125390316241011502
49.6538
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
33.0811
28.3279
39.7508
61.8410
349883351532502
94.3609
jli-customINDEL*HG002compoundhethomalt
72.9600
99.7085
57.5273
84.4270
6842684505502
99.4059
qzeng-customSNP*map_l125_m0_e0*
78.3239
66.3606
95.5494
88.8093
12864652112731593502
84.6543
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
75.5916
74.7677
76.4339
43.0667
16095431839567503
88.7125
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
82.7813
80.4513
85.2502
40.8125
32807973254563503
89.3428
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
93.9702
92.4431
95.5486
30.3243
126010311269525504
96.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
61.7012
83.4697
48.9383
56.4509
510101484505504
99.8020
ciseli-customINDEL*map_l100_m1_e0*
70.4613
65.9230
75.6705
87.5050
236412222370762504
66.1417
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
76.9641
82.1855
72.3665
61.3081
17903881477564505
89.5390
eyeh-varpipeINDEL**hetalt
52.2077
35.9353
95.4130
76.9125
90691616811066532505
94.9248
mlin-fermikitINDELD16_PLUSHG002compoundhet*
72.6643
69.4575
76.1816
36.8312
16267151628509505
99.2141
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8371
96.1907
93.5210
57.8026
17171680177401229505
41.0903
ciseli-customSNP*map_l150_m0_e0*
75.3031
70.4787
80.8364
85.2202
8480355284662007507
25.2616
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
67.0699
85.4447
55.1993
68.7686
634108637517507
98.0658
gduggal-snapfbSNP*map_l150_m1_e0het
95.7011
96.8575
94.5719
74.7840
18709607187121074507
47.2067
jlack-gatkINDELI6_15*homalt
95.8674
99.6474
92.3637
53.5505
6217226217514507
98.6381
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
54.8241
40.1571
86.3699
66.0570
373155603783597508
85.0921
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
54.8241
40.1571
86.3699
66.0570
373155603783597508
85.0921
mlin-fermikitINDELI16_PLUS*het
86.1646
90.3606
82.3411
68.6094
24562622448525508
96.7619
gduggal-snapfbSNP*map_l150_m2_e0het
95.8306
96.9701
94.7174
76.6962
19523610195261089509
46.7401
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
78.4796
67.4314
93.8575
34.5759
299814488022525510
97.1429
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.7857
94.3579
95.2175
45.4647
1120567011209563510
90.5861
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1875
96.2685
98.1242
59.9927
30236117230236578510
88.2353
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1875
96.2685
98.1242
59.9927
30236117230236578510
88.2353
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5790
73.7247
96.4741
64.8422
23586840623586862511
59.2807
gduggal-snapfbSNP*map_l150_m2_e1het
95.8511
96.9945
94.7343
76.7883
19751612197541098511
46.5392
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
59.1529
51.0315
70.3486
60.3619
9409021433604512
84.7682
gduggal-bwaplatINDEL**hetalt
82.4487
71.6091
97.1551
71.6669
18072716518066529513
96.9754
ciseli-customSNPtimap_l125_m0_e0*
78.8823
74.4554
83.8690
80.0753
9502326094991827513
28.0788
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
55.8033
65.7682
48.4608
63.2482
488254488519513
98.8439
jmaeng-gatkINDEL*HG002compoundhethet
92.6044
97.8749
87.8724
79.5506
4007873775521513
98.4645
anovak-vgINDELI6_15HG002compoundhethomalt
34.1743
61.2903
23.6923
35.6011
1912231744513
68.9516
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
78.5739
85.5355
72.6602
82.1649
232439327561037513
49.4696
gduggal-snapfbSNP*map_l100_m0_e0*
96.4309
96.3734
96.4883
71.4997
316501191316531152513
44.5312
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
67.2507
57.7531
80.4869
56.9596
306922452215537513
95.5307
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
37.8106
46.6667
31.7797
37.1505
6372300644513
79.6584
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200het
62.6355
82.0408
50.6542
55.8581
40288542528513
97.1591
ciseli-customINDEL*map_l100_m2_e0*
70.8083
66.3417
75.9196
88.0680
245012432456779514
65.9820
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
26.4385
22.6686
31.7125
37.5578
158539300646514
79.5666
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3667
99.3548
95.4567
60.8139
1632310616325777514
66.1519
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
85.7951
83.9912
87.6782
74.5242
30435803814536514
95.8955
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.4564
98.1618
96.7610
58.8376
1612730216132540515
95.3704
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
90.5713
98.5668
83.7756
81.6259
45047655452128756515
5.8817
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.5713
98.5668
83.7756
81.6259
45047655452128756515
5.8817