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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
83301-83350 / 86044 show all
ciseli-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
44.1721
50.3828
39.3245
62.5903
329324326503469
93.2406
mlin-fermikitINDELD1_5HG002complexvarhomalt
96.1786
96.9145
95.4537
57.9255
1027132710183485469
96.7010
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.8382
95.5706
94.1169
36.5552
1273597679480470
97.9167
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.4992
99.3239
93.8307
37.7780
7198497194473470
99.3658
eyeh-varpipeSNP***
99.4670
99.9638
98.9751
20.3427
30535271107299971231063471
1.5163
ciseli-customINDELI6_15HG002complexvar*
36.3268
24.7913
67.9389
56.5783
118836041157546471
86.2637
ciseli-customSNPtimap_l125_m0_e0homalt
86.4046
85.8606
86.9555
67.4980
38566353853578472
81.6609
ciseli-customSNPtvmap_l125_m2_e0homalt
87.1292
84.9759
89.3945
70.0273
51139045108606472
77.8878
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1784
93.5471
94.8182
69.0265
94236509259506472
93.2806
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.4402
98.1388
92.8860
44.9639
65911256659510472
92.5490
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
32.9974
26.9036
42.6601
71.8368
318864433582472
81.0997
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
60.5664
45.6229
90.0673
45.8084
477956964815531472
88.8889
gduggal-snapplatINDELD1_5HG002complexvarhomalt
88.1224
84.5537
92.0057
61.9576
8961163710381902472
52.3282
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2415
62.4812
60.0500
60.0866
831499720479472
98.5386
gduggal-bwafbINDELI6_15HG002compoundhethomalt
9.4162
80.6452
5.0000
41.3146
25625475473
99.5789
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
ciseli-customSNPtvmap_l125_m2_e1homalt
87.1141
84.9193
89.4252
70.0769
51589165150609473
77.6683
gduggal-snapplatSNPtimap_l150_m2_e0*
93.1515
90.7274
95.7087
84.4902
18610190218623835473
56.6467
eyeh-varpipeINDELD1_5*het
98.8729
98.5350
99.2132
51.9513
86291128385238676474
70.1183
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4762
95.2989
97.6829
51.6687
21204104621205503474
94.2346
anovak-vgINDEL*map_l100_m1_e0homalt
76.5861
87.2046
68.2728
79.5887
10701571091507474
93.4911
astatham-gatkINDEL*HG002compoundhethet
93.2853
98.3879
88.6859
79.4067
4028663786483475
98.3437
hfeng-pmm3INDEL**homalt
99.7023
99.7971
99.6077
55.0410
124918254124928492475
96.5447
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
52.3943
37.9325
84.6777
63.9143
522985565018908475
52.3128
gduggal-snapvardSNP**homalt
99.4378
98.9468
99.9337
17.0443
1167733124291158113768475
61.8490
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
41.6309
53.2787
34.1623
32.5088
260228261503475
94.4334
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.5015
91.0448
52.3810
62.2662
54954539490476
97.1429
gduggal-snapplatSNPtimap_l150_m2_e1*
93.1844
90.7639
95.7375
84.5444
18809191418822838476
56.8019
anovak-vgINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
83.8258
90.7659
77.8716
35.7639
20742112305655476
72.6718
anovak-vgINDELD16_PLUSHG002compoundhet*
28.7549
21.7001
42.6065
32.2197
5081833510687477
69.4323
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
29.8387
20.4965
54.8298
62.6973
6112370596491477
97.1487
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
73.5605
66.5605
82.2059
36.1952
6273152236484477
98.5537
mlin-fermikitINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.3394
94.5919
92.1197
68.0226
57723305728490477
97.3469
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
47.7941
75.5844
34.9456
64.9725
29194289538478
88.8476
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8021
99.7736
95.9069
61.4948
114582611458489478
97.7505
gduggal-snapplatSNPtvmap_sirenhet
96.1131
95.9558
96.2709
75.9094
274521157274681064479
45.0188
hfeng-pmm1INDEL*HG002compoundhethomalt
73.5533
99.1254
58.4695
77.3735
6806680483480
99.3789
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.3775
37.0578
83.7332
64.5819
5479930652351017480
47.1976
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
49.6401
47.9452
51.4593
46.5298
420456670632480
75.9494
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
60.2265
64.3636
56.5891
50.4418
531294730560480
85.7143
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
60.2265
64.3636
56.5891
50.4418
531294730560480
85.7143
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
28.5107
24.0260
35.0540
65.4357
296936292541480
88.7246
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.7473
94.3151
97.2237
42.8173
17221103817930512480
93.7500
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
78.4461
79.6640
77.2650
73.1213
4078104140681197480
40.1003
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
40.8888
58.1818
31.5202
57.4228
224161226491480
97.7597
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
35.1776
30.1901
42.1390
49.2400
397918394541481
88.9094
mlin-fermikitINDELI6_15*homalt
94.2236
95.9609
92.5481
47.3706
59872526011484481
99.3802
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
81.3153
78.8474
83.9428
62.4516
25316792525483481
99.5859
gduggal-bwafbINDELI6_15*homalt
93.3335
94.2940
92.3923
40.2909
58833565878484482
99.5868