PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
83151-83200 / 86044 show all
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.0066
99.5228
94.6144
77.5514
168948116918963436
45.2752
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.0066
99.5228
94.6144
77.5514
168948116918963436
45.2752
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
89.1158
94.4808
84.3273
67.4932
20201182432452436
96.4602
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4027
98.2214
98.5847
55.7301
3142356931346450436
96.8889
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
71.6109
63.4771
82.1356
31.7350
4712712023440436
99.0909
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
26.7554
24.6259
29.2880
56.6011
181554181437436
99.7712
gduggal-snapplatINDELI6_15*homalt
35.4854
25.0841
60.6230
61.9684
156546741518986436
44.2191
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtimap_l100_m1_e0het
97.3515
98.0162
96.6958
65.8783
29348594293521003436
43.4696
gduggal-snapfbSNPtimap_l100_m2_e0het
97.3939
98.0537
96.7430
68.0809
30026596300301011436
43.1256
gduggal-snapfbSNPtimap_l100_m2_e1het
97.4111
98.0685
96.7625
68.1401
30362598303661016436
42.9134
qzeng-customINDELI6_15HG002compoundhethet
84.7648
91.3462
79.0682
44.3175
190182274602437
72.5914
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.1157
91.3786
83.2329
63.6787
22472122209445437
98.2022
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1254
97.6900
98.5646
55.1368
3125373931175454437
96.2555
gduggal-snapplatSNP*HG002compoundhethet
76.3438
87.3819
67.7816
62.0964
123891789125645972438
7.3342
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
63.6599
61.2245
66.2970
66.6238
13208361375699438
62.6609
anovak-vgINDELI1_5map_l100_m2_e1homalt
67.1322
92.7778
52.5941
79.0940
50139517466438
93.9914
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3087
86.8666
74.6716
81.1723
20573112444829438
52.8347
gduggal-snapplatINDELD6_15HG002compoundhet*
47.6068
33.6951
81.0840
49.2004
304359882962691439
63.5311
gduggal-snapvardINDEL*map_l100_m2_e0*
86.0203
89.1958
83.0632
86.5245
32943994561930439
47.2043
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
81.2017
96.8037
69.9308
71.0611
636211314565439
77.6991
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1527
97.7494
98.5592
55.1204
3127272031194456439
96.2719
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
40.8457
34.5247
50.0000
39.0585
454861479479439
91.6493
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1726
72.6852
64.1876
28.7853
15759794443440
99.3228
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
jpowers-varprowlINDEL*map_siren*
91.5569
90.4453
92.6961
81.8403
67027086701528440
83.3333
rpoplin-dv42INDEL*HG002complexvar*
98.9923
98.6301
99.3571
63.4999
75884105475884491440
89.6130
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
80.9684
93.9086
71.1625
61.2108
1110721108449440
97.9955
qzeng-customSNPtimap_l125_m2_e0*
83.2073
72.4998
97.6254
82.9474
21937832121790530441
83.2075
jpowers-varprowlSNP*map_siren*
98.5825
98.3751
98.7907
60.8110
14385223761438551761441
25.0426
jlack-gatkSNP**het
99.5639
99.9321
99.1985
27.0831
18723151272187219015127441
2.9153
eyeh-varpipeINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
33.4409
22.7870
62.8044
47.2074
260881748443442
99.7743
egarrison-hhgaINDELI1_5**
99.2965
99.0761
99.5179
56.5802
1492721392149236723442
61.1342
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0945
98.9337
99.2558
72.1244
6374468763755478442
92.4686
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9540
95.2267
96.6924
48.5132
1312765813126449442
98.4410
gduggal-snapplatSNPtiHG002compoundhet*
85.7906
91.8526
80.4793
50.9850
160541424161203910442
11.3043
gduggal-snapvardINDEL*map_l100_m2_e1*
85.8099
88.8445
82.9757
86.6598
33374194601944443
46.9280
anovak-vgINDELD6_15HG002complexvarhet
77.7392
75.0641
80.6119
50.1246
23427782582621443
71.3366
qzeng-customSNPtimap_l125_m2_e1*
83.3343
72.6815
97.6462
82.9373
22218835122070532443
83.2707
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
96.4780
96.5462
96.4099
50.7305
19176686280901046443
42.3518
cchapple-customSNPti*het
99.8339
99.8795
99.7883
21.7295
1280346154512803842716443
16.3108
ckim-dragenSNP**het
99.7355
99.9519
99.5199
24.5349
187268690118730389035444
4.9142
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
44.8798
37.6755
55.4905
73.6943
4185692356854560444
9.7368
eyeh-varpipeINDELI1_5HG002complexvarhet
97.2764
97.2566
97.2962
48.7706
1769049917129476444
93.2773
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.3424
98.3065
92.5518
69.4000
5747995716460444
96.5217
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.3424
98.3065
92.5518
69.4000
5747995716460444
96.5217
gduggal-snapfbINDELI1_5*hetalt
80.2098
77.5793
83.0249
77.6167
868525104128844445
52.7251
anovak-vgINDEL*segduphomalt
76.7205
93.1250
65.2299
92.3073
89466908484445
91.9421
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1594
97.2539
97.0650
73.4982
2964383730823932445
47.7468