PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83101-83150 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 93.3883 | 91.3830 | 95.4836 | 39.3587 | 8643 | 815 | 9408 | 445 | 428 | 96.1798 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | homalt | 63.4446 | 78.5714 | 53.2020 | 84.3340 | 539 | 147 | 540 | 475 | 429 | 90.3158 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.8109 | 99.7103 | 95.9825 | 45.9159 | 10327 | 30 | 10321 | 432 | 429 | 99.3056 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.3306 | 96.7640 | 97.9038 | 49.8941 | 21530 | 720 | 21531 | 461 | 429 | 93.0586 | |
| mlin-fermikit | INDEL | I1_5 | HG002complexvar | het | 96.6423 | 95.7777 | 97.5227 | 51.7717 | 17421 | 768 | 17282 | 439 | 429 | 97.7221 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.9839 | 95.1498 | 92.8462 | 56.1753 | 10927 | 557 | 10928 | 842 | 429 | 50.9501 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.8176 | 66.8723 | 79.9231 | 50.7780 | 1843 | 913 | 1871 | 470 | 429 | 91.2766 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2987 | 96.2828 | 98.3362 | 70.4045 | 29347 | 1133 | 28902 | 489 | 430 | 87.9346 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2987 | 96.2828 | 98.3362 | 70.4045 | 29347 | 1133 | 28902 | 489 | 430 | 87.9346 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |
| ghariani-varprowl | SNP | * | map_siren | * | 98.7774 | 99.3373 | 98.2237 | 61.6367 | 145259 | 969 | 145263 | 2627 | 430 | 16.3685 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.7747 | 91.3682 | 80.8266 | 73.3477 | 1990 | 188 | 1897 | 450 | 430 | 95.5556 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.0805 | 23.8095 | 28.8303 | 55.2030 | 175 | 560 | 175 | 432 | 431 | 99.7685 | |
| ndellapenna-hhga | INDEL | I1_5 | * | * | 99.2393 | 98.9360 | 99.5445 | 55.9242 | 149061 | 1603 | 149032 | 682 | 431 | 63.1965 | |
| ghariani-varprowl | SNP | * | * | het | 99.0974 | 99.8581 | 98.3482 | 28.2380 | 1870907 | 2659 | 1871294 | 31430 | 431 | 1.3713 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6951 | 91.3730 | 96.1384 | 58.0455 | 9204 | 869 | 12448 | 500 | 431 | 86.2000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.2868 | 95.8815 | 98.7340 | 45.9174 | 14015 | 602 | 39539 | 507 | 431 | 85.0099 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5824 | 98.9009 | 98.2659 | 73.3042 | 30145 | 335 | 29694 | 524 | 432 | 82.4427 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5824 | 98.9009 | 98.2659 | 73.3042 | 30145 | 335 | 29694 | 524 | 432 | 82.4427 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.0556 | 96.6386 | 97.4762 | 58.8481 | 17077 | 594 | 17071 | 442 | 432 | 97.7376 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.0556 | 96.6386 | 97.4762 | 58.8481 | 17077 | 594 | 17071 | 442 | 432 | 97.7376 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | * | 93.2228 | 91.6135 | 94.8896 | 36.8488 | 8040 | 736 | 8040 | 433 | 432 | 99.7691 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | * | 48.6337 | 42.4224 | 56.9758 | 58.5526 | 697 | 946 | 682 | 515 | 432 | 83.8835 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.9012 | 59.7110 | 66.4516 | 34.9559 | 1033 | 697 | 1030 | 520 | 432 | 83.0769 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.8939 | 99.4854 | 96.3524 | 57.0732 | 14694 | 76 | 15268 | 578 | 432 | 74.7405 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2046 | 97.6826 | 98.7322 | 52.3033 | 35744 | 848 | 35667 | 458 | 432 | 94.3231 | |
| rpoplin-dv42 | SNP | * | * | * | 99.9587 | 99.9447 | 99.9728 | 19.0681 | 3052930 | 1689 | 3052766 | 832 | 433 | 52.0433 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | homalt | 4.7937 | 25.8065 | 2.6423 | 56.0714 | 8 | 23 | 13 | 479 | 433 | 90.3967 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ckim-dragen | INDEL | D6_15 | * | * | 97.9198 | 97.6928 | 98.1478 | 56.3201 | 25490 | 602 | 25488 | 481 | 433 | 90.0208 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.2783 | 97.3461 | 80.7559 | 60.7530 | 27217 | 742 | 27478 | 6548 | 433 | 6.6127 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.2712 | 87.6596 | 72.3480 | 57.0624 | 1236 | 174 | 1214 | 464 | 433 | 93.3190 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | homalt | 12.1241 | 90.3226 | 6.4982 | 46.3178 | 28 | 3 | 36 | 518 | 433 | 83.5907 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 89.4795 | 84.4436 | 95.1541 | 60.5296 | 13576 | 2501 | 13588 | 692 | 434 | 62.7168 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 89.4795 | 84.4436 | 95.1541 | 60.5296 | 13576 | 2501 | 13588 | 692 | 434 | 62.7168 | |
| eyeh-varpipe | INDEL | I1_5 | HG002complexvar | homalt | 96.6684 | 96.6984 | 96.6384 | 45.8931 | 13004 | 444 | 12649 | 440 | 434 | 98.6364 | |
| jlack-gatk | INDEL | I1_5 | * | homalt | 99.5330 | 99.8014 | 99.2660 | 55.8866 | 60308 | 120 | 60314 | 446 | 434 | 97.3094 | |
| bgallagher-sentieon | INDEL | I6_15 | * | * | 97.2604 | 96.4589 | 98.0753 | 52.5522 | 23944 | 879 | 23949 | 470 | 434 | 92.3404 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2317 | 97.7700 | 98.6978 | 52.2722 | 35776 | 816 | 35699 | 471 | 434 | 92.1444 | |
| rpoplin-dv42 | INDEL | D1_5 | * | het | 99.5696 | 99.7077 | 99.4320 | 57.4420 | 87318 | 256 | 87348 | 499 | 434 | 86.9739 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.6374 | 95.8769 | 95.3990 | 63.4546 | 17417 | 749 | 17417 | 840 | 435 | 51.7857 | |
| qzeng-custom | SNP | ti | map_l125_m1_e0 | * | 82.7982 | 71.8971 | 97.5960 | 82.1188 | 21091 | 8244 | 20948 | 516 | 435 | 84.3023 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.7223 | 87.9766 | 95.8011 | 68.6010 | 14144 | 1933 | 12617 | 553 | 435 | 78.6618 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.7223 | 87.9766 | 95.8011 | 68.6010 | 14144 | 1933 | 12617 | 553 | 435 | 78.6618 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 27.1461 | 25.0340 | 29.6474 | 55.0756 | 184 | 551 | 185 | 439 | 435 | 99.0888 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.1546 | 81.6568 | 24.0484 | 55.6068 | 138 | 31 | 139 | 439 | 435 | 99.0888 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5463 | 98.3740 | 98.7193 | 52.5147 | 35997 | 595 | 35921 | 466 | 435 | 93.3476 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3676 | 96.1079 | 96.6286 | 54.1432 | 24372 | 987 | 24047 | 839 | 436 | 51.9666 | |