PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
83001-83050 / 86044 show all
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.1339
90.7869
95.6056
36.5855
1006110219986459410
89.3246
gduggal-snapvardSNP*map_l100_m1_e0*
94.9349
96.5402
93.3822
73.4477
698982505689174884410
8.3948
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
81.9462
89.6097
75.4902
79.0668
16301891463475410
86.3158
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
81.9462
89.6097
75.4902
79.0668
16301891463475410
86.3158
ckim-dragenINDELI6_15HG002compoundhethomalt
12.7119
96.7742
6.8027
58.3176
30130411411
100.0000
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
62.4653
60.2952
64.7975
51.6129
8175381040565411
72.7434
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.6735
97.5949
84.6689
62.9273
2313572314419412
98.3294
mlin-fermikitINDELI16_PLUSHG002compoundhethet
6.2171
57.4468
3.2864
65.0533
272014412412
100.0000
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
97.7311
98.5279
96.9471
62.1515
1552823215370484412
85.1240
hfeng-pmm2INDEL**het
99.3911
99.1521
99.6313
58.9414
1924871646192126711412
57.9466
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
82.4326
94.7547
72.9465
54.9486
1120621119415412
99.2771
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.4008
67.1988
80.8639
50.5130
18529041872443412
93.0023
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
87.7018
87.7726
87.6311
81.7733
31804433174448412
91.9643
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.8290
73.2103
66.7462
59.7115
992363839418413
98.8038
qzeng-customINDELD16_PLUS**
79.4045
91.9517
69.8705
62.5471
623854665282815413
14.6714
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.7253
89.2979
77.0540
68.9962
446453547551416413
29.1667
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.7253
89.2979
77.0540
68.9962
446453547551416413
29.1667
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.9804
73.1132
74.8684
46.1375
20157412276764413
54.0576
rpoplin-dv42INDELD6_15HG002compoundhet*
94.2413
93.2455
95.2586
34.8015
84216108418419413
98.5680
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.2920
98.4666
96.1450
64.1784
1232919212171488413
84.6311
jlack-gatkINDELI1_5HG002compoundhethomalt
60.9506
99.3921
43.9516
87.9475
3272327417414
99.2806
gduggal-bwaplatSNP*HG002compoundhet*
88.4972
90.4035
86.6696
48.3543
233442478234453606414
11.4809
gduggal-snapvardSNP*map_l100_m2_e0*
95.0024
96.5659
93.4887
74.9387
714242540704264905414
8.4404
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1535
96.7800
97.5299
57.5288
1710256917097433414
95.6120
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1535
96.7800
97.5299
57.5288
1710256917097433414
95.6120
qzeng-customSNPtimap_l100_m1_e0het
87.3398
78.8625
97.8592
80.1613
23613632923496514414
80.5447
ckim-dragenINDELI6_15*homalt
96.6294
99.7115
93.7321
54.6498
6221186221416414
99.5192
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
61.9472
80.3853
50.3893
46.9303
459112453446414
92.8251
ciseli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
68.7950
62.4006
76.6496
65.6998
243314662393729415
56.9273
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.8256
97.5251
96.1361
70.1065
1737844118561746415
55.6300
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.7796
27.0106
45.0758
47.5149
356962357435415
95.4023
qzeng-customSNPtimap_l100_m2_e0het
87.5433
79.2078
97.8395
80.9563
24255636724137533415
77.8612
qzeng-customSNPtimap_l100_m2_e1het
87.6458
79.3605
97.8627
80.9215
24570639024451534415
77.7154
mlin-fermikitINDELD16_PLUS*het
88.5250
92.6242
84.7733
71.4486
29262332767497415
83.5010
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.6995
85.5368
87.8943
72.5250
30995243093426415
97.4178
jpowers-varprowlINDEL*map_sirenhet
92.1013
94.6539
89.6827
84.2292
42672414268491415
84.5214
bgallagher-sentieonINDELI1_5HG002compoundhet*
95.0768
93.6792
96.5167
65.8897
1157578111582418416
99.5215
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
81.0388
91.2786
72.8646
69.9021
12351181254467416
89.0792
anovak-vgINDELI1_5map_l100_m1_e0homalt
67.3385
92.8571
52.8222
77.1699
48137496443416
93.9052
bgallagher-sentieonINDELD6_15**
98.0100
97.7771
98.2439
54.8211
2551258025511456416
91.2281
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9439
96.7636
99.1534
64.2879
63236211563011538416
77.3234
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9439
96.7636
99.1534
64.2879
63236211563011538416
77.3234
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.7435
96.0727
97.4237
57.9207
1697769416979449417
92.8731
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.7435
96.0727
97.4237
57.9207
1697769416979449417
92.8731
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.3222
88.6547
76.8340
52.5393
14301831393420417
99.2857
gduggal-bwavardINDEL*map_sirenhet
90.9729
98.0035
84.8835
87.6032
4418904408785417
53.1210
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.7796
66.9983
82.0883
30.1926
4041991934422418
99.0521
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
69.0088
62.2563
77.4043
50.7888
15019101497437418
95.6522
ckim-isaacSNPtv**
98.3371
96.7926
99.9317
18.3312
93859631102938905642418
65.1090