PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82951-83000 / 86044 show all
ckim-gatkINDELI1_5**
99.3427
99.1491
99.5371
59.3239
1493821282149430695401
57.6978
cchapple-customSNP*map_l100_m1_e0het
96.8285
97.8593
95.8192
72.2809
44388971444401939401
20.6808
ciseli-customSNPtvmap_l150_m2_e1*
76.7644
71.6136
82.7136
82.0895
8237326582301720402
23.3721
ciseli-customINDELI16_PLUS*homalt
37.7444
29.7886
51.4983
66.4182
4651096464437402
91.9908
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9085
96.6244
99.2272
64.2470
63145220662918490402
82.0408
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9085
96.6244
99.2272
64.2470
63145220662918490402
82.0408
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
49.8333
42.9384
59.3660
55.4700
8301103824564402
71.2766
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.7949
99.4246
98.1731
74.1057
3058417731383584402
68.8356
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.6230
97.5440
95.7192
65.8529
1425835915451691402
58.1766
astatham-gatkINDELI1_5**
99.4616
99.2520
99.6722
58.6147
1495371127149586492402
81.7073
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
cchapple-customSNP*map_l100_m1_e0*
97.5223
97.7156
97.3298
67.9657
707491654707501941403
20.7625
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6346
96.2423
97.0302
52.9948
1326751813265406403
99.2611
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.3584
92.3931
96.4091
46.0732
1023984311115414403
97.3430
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
74.6828
72.3465
77.1751
57.2642
15205811437425403
94.8235
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8288
96.4491
97.2114
54.8569
1426052514258409404
98.7775
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
76.4099
73.8404
79.1646
73.0862
15925641592419404
96.4200
gduggal-snapplatSNPtvmap_l100_m1_e0*
94.8170
93.1840
96.5083
77.9815
22831167022830826404
48.9104
ndellapenna-hhgaINDEL*HG002complexvarhomalt
98.2704
98.7420
97.8033
53.5832
2668734026669599404
67.4457
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.5407
95.2841
91.8599
48.3177
90724499073804405
50.3731
asubramanian-gatkINDELI6_15HG002compoundhet*
93.0480
91.1691
95.0059
37.8731
80017758009421405
96.1995
gduggal-snapplatSNPtvmap_l100_m2_e0*
94.8967
93.3008
96.5482
79.3757
23356167723355835405
48.5030
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
78.6349
78.0148
79.2648
83.6794
16824741682440405
92.0455
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
84.9732
95.9483
76.2512
71.1719
1634691615503405
80.5169
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
47.0909
41.9643
53.6443
57.0892
517715552477405
84.9057
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
72.0146
63.6573
82.8979
66.4923
248214172443504406
80.5556
mlin-fermikitINDEL*map_siren*
83.8340
77.0310
91.9549
78.2144
570817025715500406
81.2000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.8086
98.8224
96.8153
66.1962
1359516213589447406
90.8277
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.8086
98.8224
96.8153
66.1962
1359516213589447406
90.8277
cchapple-customSNP*map_l100_m2_e0het
96.8591
97.8857
95.8537
73.9797
45418981454731967406
20.6406
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
57.9234
68.4909
50.1809
63.0076
413190416413407
98.5472
gduggal-snapplatSNPtvmap_l100_m2_e1*
94.9238
93.3394
96.5629
79.3964
23599168423599840407
48.4524
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
22.3230
16.2712
35.5425
80.2066
43222236061099407
37.0337
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
48.1230
32.2658
94.6289
66.5252
5390113157611432407
94.2130
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
48.1230
32.2658
94.6289
66.5252
5390113157611432407
94.2130
cchapple-customSNP*map_l100_m2_e0*
97.5457
97.7435
97.3487
69.9609
722951669722971969408
20.7212
cchapple-customSNP*map_l100_m2_e1het
96.8714
97.9018
95.8624
74.0033
45914984459671984408
20.5645
gduggal-bwavardSNP*map_siren*
97.0294
96.9773
97.0815
65.0881
14180844201398414204408
9.7050
mlin-fermikitINDELI6_15HG002compoundhethomalt
11.9676
93.5484
6.3927
50.6201
29228410408
99.5122
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
84.0483
87.8234
80.5844
69.4588
17312401710412408
99.0291
gduggal-snapfbSNPtimap_l125_m1_e0*
96.8890
96.7104
97.0682
71.9792
2837096528374857408
47.6079
gduggal-snapfbSNPtimap_l125_m2_e0*
96.9548
96.8008
97.1093
73.8651
2929096829294872409
46.9037
gduggal-snapfbSNPtimap_l125_m2_e1*
96.9811
96.8334
97.1293
73.9180
2960196829605875409
46.7429
gduggal-snapvardSNPtimap_siren*
96.3076
96.1556
96.4600
63.8276
964973858955343506409
11.6657
gduggal-snapvardINDEL*map_l100_m1_e0het
84.8981
94.4519
77.0994
87.8634
21111242993889409
46.0067
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
94.6815
98.3806
91.2505
66.8429
4374724349417409
98.0815
ckim-dragenINDELI1_5*homalt
99.5565
99.7948
99.3194
55.1956
6030412460271413409
99.0315
ciseli-customSNPtv*het
95.4085
98.2395
92.7361
26.7935
5812871041758058345476409
0.8994
cchapple-customSNP*map_l100_m2_e1*
97.5551
97.7575
97.3536
69.9828
730611676730601986410
20.6445