PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82851-82900 / 86044 show all
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5995
98.7927
98.4071
74.5792
3011236829653480385
80.2083
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5995
98.7927
98.4071
74.5792
3011236829653480385
80.2083
dgrover-gatkINDELI1_5**
99.5294
99.3841
99.6753
59.0782
149736928149786488385
78.8934
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
50.1159
99.4924
33.4936
34.9322
1961209415385
92.7711
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7404
96.3511
97.1328
51.7215
1328250313280392385
98.2143
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.4244
95.8506
97.0051
52.0671
1321357213215408385
94.3627
qzeng-customSNPtimap_l100_m0_e0*
81.5832
70.3459
97.0931
83.0504
15315645615231456385
84.4298
qzeng-customSNPtimap_l125_m1_e0het
82.7364
72.3585
96.5897
86.1572
13217504913170465385
82.7957
qzeng-customSNPtimap_l150_m2_e0*
80.3185
68.5989
96.8676
87.0371
14071644113978452386
85.3982
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.2627
95.4437
97.0959
63.8638
1395166613574406386
95.0739
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.9208
96.5506
97.2938
53.6376
1427551014273397386
97.2292
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
81.4700
91.7896
73.2362
71.7064
560150164362352386
16.4116
ciseli-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
60.3870
78.8652
48.9241
68.3622
111229812051258386
30.6836
ciseli-customINDELI16_PLUSHG002compoundhethomalt
0.9434
33.3333
0.4785
52.5000
122416387
93.0288
ciseli-customSNPtvmap_l150_m1_e0*
76.2235
70.9861
82.2954
80.7468
7746316677441666387
23.2293
ciseli-customINDEL*map_sirenhomalt
73.0250
68.4746
78.2234
81.7056
18188371814505387
76.6337
qzeng-customSNPtimap_l125_m2_e0het
83.1453
72.9498
96.6538
86.6306
13770510613720475387
81.4737
qzeng-customSNPtimap_l125_m2_e1het
83.2669
73.1126
96.6968
86.6188
13955513213905475387
81.4737
qzeng-customSNPtimap_l150_m2_e1*
80.4222
68.7352
96.8977
87.0560
14244647914149453387
85.4305
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.1882
84.7031
89.8235
87.4240
387116991388374400387
8.7955
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.1882
84.7031
89.8235
87.4240
387116991388374400387
8.7955
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
40.8570
44.3272
37.8906
67.8795
168211291477388
81.3417
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
65.4441
60.5202
71.2401
29.6193
10476831080436388
88.9908
egarrison-hhgaINDELI6_15**
96.6680
95.4155
97.9538
47.3697
23685113823696495388
78.3838
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.0194
98.8917
97.1624
67.0369
1445516214073411388
94.4039
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7705
99.7193
97.8396
67.4095
181155118115400388
97.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.5878
96.0095
97.1732
53.9900
1419559014197413388
93.9467
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8427
98.3427
99.3479
69.0114
4747180076325501389
77.6447
anovak-vgSNPtimap_l250_m2_e0het
72.1503
86.5704
61.8482
92.2282
281743728111734389
22.4337
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
39.9604
56.2674
30.9816
39.7969
202157202450389
86.4444
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.9925
94.4604
95.5306
69.2327
95155589362438390
89.0411
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7235
93.8350
95.6289
69.0222
94526219298425390
91.7647
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-dragenINDELI1_5HG002compoundhethomalt
62.2015
99.0881
45.3278
87.8082
3263325392391
99.7449
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6351
98.9928
98.2801
74.5158
3017330729714520391
75.1923
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6351
98.9928
98.2801
74.5158
3017330729714520391
75.1923
ciseli-customSNPtvmap_l100_m0_e0*
78.9086
74.1158
84.3641
75.9006
8215286982121522391
25.6899
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
63.9702
49.9564
88.9115
43.5949
344034463496436391
89.6789
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0265
98.4792
97.5780
71.1859
1754827117163426391
91.7840
jmaeng-gatkINDELI1_5**
99.2409
99.0383
99.4444
59.6817
1492151449149263834391
46.8825
egarrison-hhgaINDELD1_5HG002complexvarhet
97.8863
98.0978
97.6758
52.4481
2037039520424486392
80.6584
gduggal-snapplatINDELI1_5HG002compoundhethetalt
56.9417
41.4601
90.8753
78.7291
463465434651467392
83.9400
gduggal-bwavardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5998
97.4834
97.7164
62.9555
542311400536171253392
31.2849
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8660
97.7360
97.9964
54.8200
2732663327341559392
70.1252
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.6952
95.8752
97.5293
67.9232
1708473516698423393
92.9078
qzeng-customINDEL*HG002complexvarhet
97.8163
97.7928
97.8398
56.2530
451921020492331087393
36.1546