PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82801-82850 / 86044 show all
raldana-dualsentieonINDELI6_15**
96.8613
95.4115
98.3558
49.7486
23684113923689396375
94.6970
gduggal-snapvardSNP*map_l100_m2_e1het
93.3754
96.7973
90.1872
78.6618
453961502448054875376
7.7128
anovak-vgINDELI1_5segduphomalt
68.8866
95.9831
53.7209
91.7355
45419462398376
94.4724
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.6630
95.0637
74.7040
77.8987
1194621199406377
92.8571
gduggal-snapfbSNP*map_l125_m0_e0het
95.0102
96.1466
93.9004
73.7575
1217648812177791378
47.7876
gduggal-snapfbINDEL*HG002compoundhethetalt
76.0060
64.4003
92.7141
74.7872
1621689645739451378
83.8137
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
76.1074
78.6642
73.7116
78.2560
16964601702607378
62.2735
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.4833
97.3914
82.7630
66.8151
26956722270135626378
6.7188
ckim-dragenSNPti**
99.8327
99.9538
99.7120
20.2602
208454796420848166022378
6.2770
jpowers-varprowlINDELI1_5HG002complexvarhomalt
96.2923
95.8879
96.7001
41.8106
1289555312835438379
86.5297
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.8514
93.2059
90.5357
48.9295
878644276447379
84.7875
gduggal-bwafbINDELI6_15*het
88.0827
80.5342
97.1926
38.4775
8080195313848400379
94.7500
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
76.6125
83.7838
70.5720
29.6655
5891141024427379
88.7588
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
90.4279
98.3630
83.6775
77.1548
2103352107411380
92.4574
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.8288
98.4539
97.2116
67.2453
1439122614015402380
94.5274
rpoplin-dv42INDELD1_5HG002compoundhet*
95.7563
94.7855
96.7473
62.2778
1159763811600390380
97.4359
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
qzeng-customSNPtimap_l150_m1_e0*
79.6789
67.7202
96.7669
86.5194
13349636313259443380
85.7788
mlin-fermikitINDELD6_15HG002complexvar*
90.8139
89.4568
92.2128
58.0463
47435594784404381
94.3069
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.9148
94.6211
83.8576
74.5711
20231152026390381
97.6923
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.5350
93.7209
89.4487
79.3835
62394186587777381
49.0347
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
ckim-isaacINDEL**homalt
96.2069
93.1918
99.4236
48.6128
1166508522116601676381
56.3609
eyeh-varpipeINDELI16_PLUS*het
50.8662
38.8889
73.5049
38.7042
105716611057381381
100.0000
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.5684
96.5352
96.6016
59.0391
1549155615492545381
69.9083
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
73.0618
58.0378
98.5812
63.1306
178531290828349408382
93.6275
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
64.6167
62.4637
66.9234
55.7051
15069051564773382
49.4179
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
59.7902
69.7674
52.3096
34.3980
420182419382382
100.0000
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
gduggal-bwafbSNPti*het
99.7363
99.8649
99.6080
22.2231
1280165173212802845038382
7.5824
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
55.3143
76.7267
43.2455
81.7971
511155509668383
57.3353
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
55.3143
76.7267
43.2455
81.7971
511155509668383
57.3353
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5636
99.5347
95.6691
57.4517
100554710073456383
83.9912
asubramanian-gatkINDELD1_5**
99.2637
98.9281
99.6016
61.0980
1451721573145253581383
65.9208
anovak-vgINDEL*map_l125_m2_e0*
72.8494
74.4991
71.2712
87.8407
16365601682678383
56.4897
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6759
98.9370
98.4161
73.8431
3015632429701478383
80.1255
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6759
98.9370
98.4161
73.8431
3015632429701478383
80.1255
rpoplin-dv42INDELI6_15*het
96.6553
97.2291
96.0883
56.6301
97552789752397383
96.4736
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3343
99.9317
98.7440
74.3514
307402130740391384
98.2097
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.5868
37.3203
44.4800
81.8709
571959556694384
55.3314
gduggal-bwavardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.5868
37.3203
44.4800
81.8709
571959556694384
55.3314
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3350
95.8393
98.8782
52.0725
36325157736139410384
93.6585
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.3115
93.4534
63.0682
57.8947
57140666390384
98.4615