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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82701-82750 / 86044 show all
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
37.6387
31.0491
47.7790
58.0455
367815441482356
73.8589
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
39.9506
39.3669
40.5518
64.0084
485747485711356
50.0703
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2837
99.7301
96.8787
61.7262
114533111453369356
96.4770
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
49.3293
79.5367
35.7513
30.4087
20653207372357
95.9677
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
58.5125
78.4461
46.6568
31.7444
31386314359357
99.4429
jlack-gatkINDEL*HG002complexvar*
99.2231
99.0863
99.3603
58.0205
7623570376113490357
72.8571
gduggal-snapplatSNP*map_l150_m0_e0*
89.5961
85.5219
94.0779
88.4577
10290174210294648357
55.0926
anovak-vgSNPtvmap_l150_m0_e0*
77.9452
82.2472
74.0709
86.1595
343374134281200357
29.7500
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1423
98.9601
97.3379
67.2353
1446515214077385358
92.9870
jlack-gatkSNP*map_siren*
98.0143
99.3920
96.6743
64.0744
1453398891453164999358
7.1614
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1076
98.6776
99.5414
71.9967
93200124993118429358
83.4499
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
73.1196
89.0957
62.0019
58.7223
67082669410358
87.3171
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.0947
92.4215
93.7777
64.0101
56224615501365358
98.0822
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.3846
71.4286
23.5174
34.4504
11546115374359
95.9893
ckim-dragenINDELD1_5HG002compoundhet*
95.8880
94.8263
96.9738
65.9095
1160263311600362359
99.1713
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3348
98.9955
97.6830
71.3901
1764017917243409359
87.7751
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.4883
82.5826
59.9782
80.9276
550116550367359
97.8202
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.4883
82.5826
59.9782
80.9276
550116550367359
97.8202
gduggal-snapplatSNPtvmap_l125_m2_e0*
93.3644
91.2184
95.6138
83.0664
15041144815041690359
52.0290
gduggal-snapplatSNPtvmap_l125_m2_e1*
93.3986
91.2649
95.6344
83.1005
15202145515203694360
51.8732
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5538
96.1694
98.9788
57.8031
41675166041482428360
84.1121
eyeh-varpipeINDELI16_PLUSHG002compoundhet*
16.3932
10.4060
38.6054
37.9092
2231920227361360
99.7230
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.9826
99.7269
96.2982
53.7111
9495269495365360
98.6301
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
82.5839
81.3183
83.8895
82.0997
21594962187420360
85.7143
eyeh-varpipeINDELD16_PLUSHG002complexvar*
59.4403
51.7955
69.7324
50.7211
851792834362361
99.7238
mlin-fermikitINDELI6_15HG002complexvar*
88.7918
85.8097
91.9886
56.6838
41126804191365361
98.9041
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.7876
99.0041
85.5516
65.0041
2187222179368361
98.0978
ciseli-customSNP*lowcmp_SimpleRepeat_diTR_11to50*
78.8703
94.8102
67.5188
69.4075
918950393504498362
8.0480
cchapple-customSNPtimap_sirenhet
98.0329
98.5813
97.4906
61.4640
61497885615381584362
22.8535
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.7893
98.0137
97.5659
71.4911
3015061130142752362
48.1383
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
37.1500
27.9605
55.3371
59.9550
5951533591477362
75.8910
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1121
98.7732
95.5059
60.7561
82931038288390362
92.8205
qzeng-customINDELI16_PLUS**
83.4199
82.9387
83.9068
61.2425
5289108852921015362
35.6650
gduggal-bwaplatSNPtvHG002complexvar*
97.3488
95.7603
98.9909
25.1801
235716104362359302405362
15.0520
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
27.0890
20.6844
39.2387
39.7707
2721043268415363
87.4699
anovak-vgSNPtimap_l250_m1_e0het
71.0849
85.8491
60.6538
92.0278
254842025421649363
22.0133
ghariani-varprowlINDELI1_5HG002complexvarhomalt
95.8338
95.7466
95.9213
42.3182
1287657212817545363
66.6055
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.0585
36.9961
43.6736
81.3091
3111529831794100363
8.8537
mlin-fermikitINDELD16_PLUSHG002compoundhethet
55.6184
84.9383
41.3462
47.6949
34461258366363
99.1803
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.2411
88.1901
92.3898
58.0809
49366614589378364
96.2963
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.7380
98.6175
84.0244
38.7433
1926271925366364
99.4536
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.5334
83.2452
76.1384
70.7854
20474122090655364
55.5725
jmaeng-gatkINDELI6_15**
97.3971
96.5435
98.2659
53.3907
2396585823970423364
86.0520
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
86.9441
95.3611
79.8924
72.5785
1624791633411364
88.5645
jlack-gatkSNPti**
99.7777
99.9393
99.6165
21.7408
2084246126520841828024364
4.5364
ndellapenna-hhgaINDELD1_5HG002complexvarhet
97.7232
97.5199
97.9274
51.5698
2025051520317430365
84.8837
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.0020
98.6553
99.3511
53.3614
2788038059096386365
94.5596
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1803
96.5537
97.8151
57.7486
1706260917057381365
95.8005