PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82651-82700 / 86044 show all
qzeng-customSNPtimap_l150_m2_e1het
80.5961
69.6581
95.6089
89.9144
906639499036415349
84.0964
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3761
95.8604
98.9406
51.0374
36333156936144387350
90.4393
gduggal-snapplatSNP*map_l150_m0_e0het
89.5077
87.5441
91.5613
90.3664
69519896955641350
54.6022
ciseli-customSNP*map_l250_m2_e1*
69.2947
64.8053
74.4524
92.2088
5176281151671773350
19.7406
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1904
98.9943
97.3994
67.4787
1447014714082376350
93.0851
anovak-vgSNPtvmap_l150_m0_e0het
76.3189
87.6187
67.6007
87.1885
249135224851191350
29.3871
asubramanian-gatkINDELI1_5HG002compoundhet*
95.2373
93.5902
96.9436
67.0365
1156479211577365350
95.8904
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
93.4046
90.2930
96.7382
47.0617
17934192817795600351
58.5000
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
42.6554
78.6458
29.2636
46.1940
15141151365351
96.1644
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
16.8236
10.3093
45.7020
62.4933
3603132319379351
92.6121
gduggal-snapfbSNPtimap_l150_m2_e1*
96.3445
96.0141
96.6772
77.8313
1989782619901684351
51.3158
gduggal-snapplatSNPtvmap_l125_m1_e0*
93.2502
91.0465
95.5633
81.8317
14582143414582677351
51.8464
gduggal-bwaplatSNPtv*het
98.5255
97.5640
99.5062
36.2003
577282144145775772866351
12.2470
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
89.3164
86.6966
92.0994
71.2589
44386814523388351
90.4639
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.8529
99.4937
87.0432
60.7107
2358122358351351
100.0000
mlin-fermikitINDELI1_5HG002complexvarhomalt
96.8973
96.5125
97.2853
48.2881
1297946912901360351
97.5000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
ndellapenna-hhgaSNP*HG002complexvar*
99.7910
99.6474
99.9350
18.9550
7517212660751769489351
71.7791
mlin-fermikitINDELD1_5HG002complexvarhet
96.8827
95.7525
98.0399
50.2469
1988388219757395351
88.8608
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4936
95.9940
99.0408
57.8182
41599173641405401351
87.5312
gduggal-snapplatSNPtvmap_l125_m2_e0het
93.2998
93.1527
93.4473
85.9522
97277159726682352
51.6129
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.3645
86.4174
80.5198
60.1495
27744363005727352
48.4182
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200*
78.0896
75.1071
81.3187
71.3321
15785231554357352
98.5994
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2133
99.5848
98.8446
73.6714
3309813833109387353
91.2145
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
ciseli-customSNPtiHG002complexvarhet
96.3296
95.9112
96.7516
18.3708
3018961287029942210053353
3.5114
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
80.6298
89.3985
73.4276
74.6915
11891411039376353
93.8830
gduggal-snapplatSNPtvmap_l125_m2_e1het
93.3381
93.1962
93.4803
85.9836
98357189836686353
51.4577
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
52.6126
49.5308
56.1033
72.8835
475484478374353
94.3850
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.0921
61.2589
79.2222
54.8419
9445971426374353
94.3850
jmaeng-gatkINDELD6_15HG002compoundhet*
95.0402
94.1203
95.9783
36.0728
85005318496356353
99.1573
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.8947
98.7270
95.1293
53.9091
7290947285373354
94.9062
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
92.4559
95.1485
89.9115
78.4139
38441963556399354
88.7218
egarrison-hhgaINDEL*HG002complexvarhomalt
98.5044
98.8604
98.1509
53.6323
2671930826700503354
70.3777
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2947
98.8383
97.7570
71.4388
1761220717215395354
89.6203
qzeng-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
88.4979
97.7029
80.8780
52.7675
638152174514354
68.8716
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
50.1083
46.0897
54.8947
70.8664
442517443364355
97.5275
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.4755
62.1622
53.4460
78.1472
414252411358355
99.1620
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.5147
94.2784
98.8597
54.0704
52448318352797609355
58.2923
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3320
98.9618
97.7101
71.4422
1763418517239404355
87.8713
cchapple-customINDELI1_5**
99.2924
98.8889
99.6992
56.2734
1489901674149480451355
78.7140
gduggal-snapvardSNPtimap_sirenhet
95.3627
96.2088
94.5314
68.3335
600172365594993442355
10.3138
gduggal-snapplatINDELI1_5*homalt
83.6103
76.4695
92.2220
62.8436
4620914219467043939356
9.0378
mlin-fermikitSNPtvmap_l150_m0_e0*
46.6065
33.3972
77.1018
65.0425
139427801394414356
85.9903
mlin-fermikitSNPtvmap_l150_m0_e0homalt
51.4655
44.9548
60.1815
60.0161
597731597395356
90.1266
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.4281
91.8537
95.0573
78.9460
419793723415022158356
16.4968
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4281
91.8537
95.0573
78.9460
419793723415022158356
16.4968