PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82551-82600 / 86044 show all
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438
gduggal-snapfbINDELD6_15HG002complexvar*
75.6069
64.9189
90.5077
47.3259
344218603423359338
94.1504
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.3922
97.0358
90.0123
67.8126
539821649533805923338
5.7066
gduggal-snapvardSNP*map_l125_m2_e1*
93.7321
96.5489
91.0750
79.3697
455731629449714407338
7.6696
gduggal-snapplatSNP*HG002complexvarhomalt
98.9173
98.0729
99.7763
21.2516
2830145561282787634338
53.3123
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4052
61.1563
91.7896
37.5114
443228154416395339
85.8228
qzeng-customSNPtvmap_siren*
92.0283
86.1093
98.8212
67.3017
39550638039401470339
72.1277
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
83.5594
82.2599
84.9006
82.0181
21844712221395339
85.8228
asubramanian-gatkINDELD1_5HG002compoundhet*
95.6905
94.4340
96.9809
66.6013
1155468111564360339
94.1667
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3899
99.7736
97.0441
62.0464
114582611458349339
97.1347
raldana-dualsentieonINDELI1_5HG002compoundhet*
94.0016
91.1217
97.0695
64.7141
11259109711262340339
99.7059
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.2676
97.9992
98.5375
41.6126
2404949124053357339
94.9580
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.3548
95.3881
66.4830
78.8960
13899672139987057339
4.8037
ciseli-customSNPtvmap_l150_m1_e0homalt
85.3488
82.6913
88.1828
71.9082
32636833261437339
77.5744
ciseli-customINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
24.2522
20.4082
29.8805
51.4507
150585150352340
96.5909
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9682
99.6336
96.3576
67.1524
100603710079381340
89.2388
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
73.4486
61.1425
91.9567
37.2269
443128164413386340
88.0829
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
jli-customINDEL**het
99.5119
99.3015
99.7232
58.0133
1927771356192389534340
63.6704
gduggal-snapfbSNPtiHG002compoundhet*
85.8670
98.1291
76.3290
43.9481
17151327173455379340
6.3209
gduggal-snapplatSNPtimap_l125_m0_e0*
91.6685
88.4893
95.0846
83.9409
11293146911297584340
58.2192
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
rpoplin-dv42INDEL*lowcmp_SimpleRepeat_diTR_51to200het
60.4235
77.7551
49.4100
70.5217
381109335343340
99.1254
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.5762
95.2963
88.1356
47.4691
31201542808378341
90.2116
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2937
95.6572
98.9872
51.0230
36256164636066369341
92.4119
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.1643
88.4244
98.4410
44.1529
12925169227215431341
79.1183
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3940
99.7649
97.0603
61.7981
114572711457347341
98.2709
gduggal-snapfbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6436
98.9102
73.9737
69.3624
350333863540912458341
2.7372
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
56.0755
41.6302
85.8726
84.0433
247234662480408341
83.5784
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.3331
34.4623
43.1834
76.0195
2381452824203184342
10.7412
gduggal-snapfbSNPtvHG002complexvarhet
98.4837
99.5363
97.4531
25.4817
1500356991503383929342
8.7045
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5160
97.0969
97.9388
58.0884
1715851317153361342
94.7368
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5160
97.0969
97.9388
58.0884
1715851317153361342
94.7368
cchapple-customSNP*map_l125_m1_e0het
96.0557
97.2739
94.8677
77.0814
27618774276531496342
22.8610
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
45.4191
32.4145
75.8496
67.6203
185838741674533342
64.1651
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.6615
97.9986
93.4332
70.5962
57291175677399342
85.7143
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
95.6615
97.9986
93.4332
70.5962
57291175677399342
85.7143
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7498
97.1281
98.3795
53.6051
2161163921612356342
96.0674
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.6020
69.2502
90.8738
58.9733
437819443515353342
96.8839
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.3228
88.0846
94.8081
46.5735
21662937140391343
87.7238
cchapple-customSNP*map_l125_m1_e0*
96.8884
97.0680
96.7095
73.1758
439981329439981497343
22.9125