PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82501-82550 / 86044 show all
qzeng-customSNP*map_l250_m2_e1*
75.9076
64.2294
92.7764
95.4610
513028575086396330
83.3333
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1709
99.7794
96.6134
55.6813
9500219500333330
99.0991
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
58.4075
59.7906
57.0870
76.5044
571384584439331
75.3986
anovak-vgINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
67.8590
93.2584
53.3333
46.3895
24918392343331
96.5015
ckim-vqsrINDELI6_15**
97.6524
96.7691
98.5520
52.9508
2402180224026353331
93.7677
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1504
99.7689
96.5836
55.8513
9499229499336332
98.8095
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
53.5889
45.7759
64.6178
56.5306
997118120711134332
29.2769
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9690
91.1857
96.9275
72.3266
14204137312524397332
83.6272
jpowers-varprowlSNP*map_l100_m2_e0*
98.0473
97.7530
98.3434
71.6108
723021662723041218332
27.2578
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
50.4202
43.0804
60.7748
52.4011
7721020753486332
68.3128
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4217
98.4028
98.4406
75.5838
4750077149303781332
42.5096
ndellapenna-hhgaSNP**homalt
99.9243
99.8838
99.9648
18.1151
117879013711178818415332
80.0000
ciseli-customINDELI6_15HG002complexvarhomalt
51.5500
45.4695
59.5078
51.7279
552662532362333
91.9890
raldana-dualsentieonINDELD6_15**
97.6719
96.7155
98.6474
52.2270
2523585725235346333
96.2428
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.6075
95.2464
98.0080
54.6884
1683184016827342333
97.3684
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.6075
95.2464
98.0080
54.6884
1683184016827342333
97.3684
gduggal-snapvardSNP*map_l125_m1_e0*
93.5846
96.5275
90.8158
77.9328
437531574431824367333
7.6254
gduggal-snapfbSNPtimap_l150_m1_e0het
95.7023
96.5643
94.8555
74.3999
1194542511948648334
51.5432
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1456
99.7794
96.5643
55.8438
9500219500338334
98.8166
ndellapenna-hhgaINDELI6_15HG002compoundhet*
93.3379
91.5109
95.2392
35.4681
80317458042402334
83.0846
jpowers-varprowlSNP*map_l100_m2_e1*
98.0534
97.7615
98.3471
71.6291
730641673730661228334
27.1987
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
74.9889
82.2562
68.9015
82.7699
14513131819821334
40.6821
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7436
97.0652
98.4317
54.5032
2159765321590344335
97.3837
ckim-gatkINDELI6_15**
97.6383
96.8416
98.4482
52.9059
2403978424044379335
88.3905
ckim-dragenINDEL**het
99.4503
99.5962
99.3048
61.2221
1933497841928411350335
24.8148
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.1406
89.3302
90.9658
70.1878
57356855689565335
59.2920
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1406
89.3302
90.9658
70.1878
57356855689565335
59.2920
gduggal-snapfbSNPtimap_l150_m2_e0het
95.8374
96.6850
95.0046
76.3778
1245442712457655335
51.1450
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.0582
99.4990
96.6586
57.2289
146967414695508335
65.9449
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8830
96.2858
97.4877
51.4550
1327351213271342335
97.9532
anovak-vgINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
72.4560
79.2319
66.7478
27.2137
557146823410336
81.9512
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6411
96.9703
98.3214
47.5930
1997262419973341336
98.5337
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.8931
74.1034
96.6631
64.8282
16488576216483569336
59.0510
gduggal-snapvardSNP*map_l125_m2_e0*
93.7014
96.5392
91.0256
79.3194
451061617445174389336
7.6555
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.4089
97.4545
82.5903
53.4716
804211760371336
90.5660
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.4089
97.4545
82.5903
53.4716
804211760371336
90.5660
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.4419
95.8245
95.0624
80.9574
1035045110358538336
62.4535
astatham-gatkINDELI6_15**
97.8089
97.1035
98.5247
52.8353
2410471924109361337
93.3518
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0502
96.4694
97.6380
53.4915
1426352214261345337
97.6812
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.0893
98.5240
97.6583
55.6495
1455221814555349337
96.5616
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
67.0086
90.2935
53.2710
31.8471
40043399350337
96.2857
gduggal-snapfbSNPtimap_l150_m2_e1het
95.8577
96.7115
95.0189
76.5004
1258742812590660337
51.0606
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
48.4456
45.3883
51.9444
59.2990
374450374346337
97.3988
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
73.4367
65.0167
84.3621
45.9065
13667351845342338
98.8304
jmaeng-gatkINDELD1_5**
99.3810
99.3322
99.4300
61.6387
145765980145820836338
40.4306
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
79.4418
90.8058
70.6058
71.2226
87989944393338
86.0051
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438