PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82451-82500 / 86044 show all
ghariani-varprowlSNP*map_l100_m2_e1*
98.3564
99.0460
97.6764
72.0101
74024713740271761324
18.3986
astatham-gatkINDELI6_15HG002compoundhet*
94.7145
93.3113
96.1606
37.2227
81895878190327325
99.3884
qzeng-customINDEL*HG002complexvarhomalt
98.4127
98.7679
98.0601
51.6191
2669433326841531325
61.2053
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
jlack-gatkINDELD6_15HG002compoundhethet
80.7008
96.6121
69.2893
65.6695
82729819363325
89.5317
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.5847
98.2941
91.1451
66.4714
3803663757365325
89.0411
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3791
96.4809
98.2942
54.2906
2146778321493373326
87.3995
gduggal-snapfbSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.6693
98.8054
78.7892
66.3228
27625334279047512326
4.3397
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1683
81.1429
75.4042
51.8889
8521981306426326
76.5258
gduggal-snapvardSNPti*homalt
99.4493
98.9663
99.9370
16.0694
7947388301790421498326
65.4618
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
33.7717
31.2245
36.7713
63.1405
153337246423326
77.0686
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2418
99.0470
99.4374
74.2668
6381761463806361326
90.3047
ckim-gatkINDELD1_5**
99.4755
99.4262
99.5247
61.4945
145903842145958697326
46.7719
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
ckim-vqsrINDELD6_15HG002compoundhet*
95.5291
94.7736
96.2967
36.1965
85594728555329326
99.0881
gduggal-bwafbINDELI1_5HG002complexvar*
97.5502
96.2593
98.8762
54.2720
32115124832201366326
89.0710
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
61.5270
78.8288
50.4532
56.2459
35094334328326
99.3902
qzeng-customINDELD16_PLUSHG002compoundhet*
75.9486
81.4609
71.1351
32.7367
19074342112857326
38.0397
qzeng-customINDELI1_5*homalt
99.1725
99.1196
99.2255
48.3268
5989653259833467326
69.8073
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.9424
86.3802
89.5622
71.3205
30764853089360326
90.5556
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.7811
94.6932
90.9448
44.0938
571323706369326
88.3469
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.9227
78.1124
88.3643
60.1791
31128723182419327
78.0430
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.1497
98.3806
92.1243
67.5306
4374724328370327
88.3784
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2748
99.1091
99.4411
74.0482
6385757463870359327
91.0864
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1914
99.7899
96.6433
56.0900
9501209501330327
99.0909
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909
raldana-dualsentieonINDELD6_15HG002compoundhet*
93.9555
91.8392
96.1717
34.6920
82947378290330328
99.3939
jpowers-varprowlSNP*map_l100_m1_e0*
98.0599
97.7308
98.3912
69.8054
707601643707621157328
28.3492
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
52.6084
47.9255
58.3056
39.7096
566615702502328
65.3386
qzeng-customSNP*map_l250_m2_e0*
75.7461
64.0330
92.7037
95.4455
504928365006394328
83.2487
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9699
22.4138
55.7303
40.4682
104360496394328
83.2487
bgallagher-sentieonINDELI1_5HG002compoundhethomalt
66.5990
99.6960
50.0000
87.6390
3281328328328
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6327
96.9169
98.3591
48.8223
1996163519961333328
98.4985
ckim-dragenINDELD6_15HG002compoundhethomalt
12.7321
100.0000
6.7989
76.0353
24024329328
99.6960
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
67.2522
88.7931
54.1223
65.4094
41252407345328
95.0725
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
46.7905
38.6828
59.1981
64.3248
511810502346329
95.0867
dgrover-gatkINDELI6_15**
97.9082
97.2888
98.5355
53.2809
2415067324155359329
91.6435
gduggal-snapfbINDELD1_5HG002complexvarhet
94.7486
94.6159
94.8816
54.6441
196471118206321113329
29.5597
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
51.4209
36.9403
84.5736
68.1324
217837182182398329
82.6633
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.4209
36.9403
84.5736
68.1324
217837182182398329
82.6633
gduggal-snapfbSNPtimap_l100_m0_e0het
96.0596
96.8390
95.2927
67.8767
1354144213543669329
49.1779
ckim-dragenINDELD6_15*homalt
97.3161
99.7471
95.0008
59.2976
6310166309332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.5913
99.6283
91.8687
63.3516
3752143751332329
99.0964
ciseli-customSNPtimap_l150_m0_e0*
76.8096
72.5099
81.6514
84.8420
5700216156961280329
25.7031
ckim-gatkINDELD6_15HG002compoundhet*
95.5310
94.8178
96.2551
36.1757
85634688559333330
99.0991
egarrison-hhgaINDELD16_PLUS**
85.6324
79.0831
93.3644
63.5644
536514195417385330
85.7143
gduggal-snapplatINDELI1_5HG002compoundhethomalt
46.8802
63.5258
37.1467
83.7347
209120276467330
70.6638
gduggal-snapplatSNPtimap_l125_m0_e0het
91.6658
90.4877
92.8749
86.7400
74777867482574330
57.4913