PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82401-82450 / 86044 show all
astatham-gatkINDELD1_5**
99.5682
99.4433
99.6934
60.4898
145928817145983449317
70.6013
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.3524
99.2470
95.5288
54.1878
8303638888416317
76.2019
gduggal-snapfbINDELI6_15HG002complexvarhet
77.1850
70.0212
85.9817
41.0929
16497062067337317
94.0653
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
60.7128
46.4157
87.7382
45.3351
439050684236592317
53.5473
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
63.0485
48.1459
91.3123
63.3492
402543354015382317
82.9843
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.0485
48.1459
91.3123
63.3492
402543354015382317
82.9843
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.9837
67.6931
89.2302
57.8962
263812592643319317
99.3730
hfeng-pmm2INDEL*HG002compoundhethet
86.3875
82.5598
90.5872
78.6150
33807143147327317
96.9419
ghariani-varprowlSNP*map_l100_m1_e0*
98.3728
99.0277
97.7266
70.1377
71699704717021668318
19.0647
ckim-vqsrINDELD1_5**
99.5124
99.3485
99.6767
61.5493
145789956145843473318
67.2304
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
44.1953
30.1465
82.7653
67.2461
172840041700354318
89.8305
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
85.6607
94.4974
78.3354
70.0293
1288751280354318
89.8305
raldana-dualsentieonINDELI6_15*homalt
97.3324
99.7115
95.0642
52.3622
6221186221323318
98.4520
ckim-dragenSNPti*het
99.7466
99.9566
99.5375
22.8315
128133555612814945955318
5.3401
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
84.3637
87.9716
81.0401
48.2088
32184403257762318
41.7323
ciseli-customINDEL*map_l100_m2_e1het
73.2415
70.9774
75.6549
89.0075
16636801675539319
59.1837
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1837
96.7573
97.6138
51.8740
1333844713336326319
97.8528
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5410
98.7028
87.1034
79.6250
30739404308324565319
6.9880
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2830
96.3585
98.2253
48.3467
1984675019870359319
88.8579
anovak-vgINDELD16_PLUSHG002compoundhethet
47.7497
45.4321
50.3165
27.0208
184221477471319
67.7282
ckim-vqsrINDELI6_15HG002compoundhet*
94.2580
92.3997
96.1926
36.2881
81096678110321319
99.3769
rpoplin-dv42INDEL*HG002complexvarhet
98.9928
98.7730
99.2136
57.1040
4564556745545361319
88.3657
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
97.7920
99.4303
96.2068
45.3054
102985910906430320
74.4186
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3304
96.9158
97.7485
53.9045
1432945614327330320
96.9697
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.9504
99.5147
90.7864
82.3867
3896193902396320
80.8081
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
74.5853
86.8721
65.3433
69.9161
761115609323321
99.3808
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.2813
99.4514
97.1385
53.8661
114216311406336321
95.5357
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
73.3800
60.1280
94.1249
85.4676
1832712153183281144321
28.0594
gduggal-bwaplatINDELD1_5HG002complexvar*
91.7545
85.9392
98.4139
61.1958
28115460028045452321
71.0177
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
79.4494
75.6494
83.6513
75.4184
16315251929377321
85.1459
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2554
96.9169
97.5963
51.8216
1336042513358329322
97.8723
ghariani-varprowlSNP*map_l100_m2_e0*
98.3520
99.0401
97.6734
71.9819
73254710732571745322
18.4527
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
80.5518
94.6809
70.0921
54.5132
44525989422322
76.3033
gduggal-snapplatSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5770
82.0514
93.9006
76.3684
456469985457542972322
10.8345
ciseli-customSNP*map_l250_m1_e0*
68.5054
64.2204
73.4031
91.7933
4638258446311678322
19.1895
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3971
97.0646
97.7319
53.7356
1435143414349333323
96.9970
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
53.2492
76.3251
40.8875
57.2493
21667258373323
86.5952
ckim-isaacINDELD1_5HG002complexvarhet
94.5641
92.7330
96.4689
45.1790
19256150918687684323
47.2222
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.2602
98.2179
92.4754
79.7293
30588555306752496323
12.9407
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.2602
98.2179
92.4754
79.7293
30588555306752496323
12.9407
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
43.1111
37.0091
51.6227
61.5894
245417509477324
67.9245
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
32.6056
25.2495
46.0100
54.7659
253749369433324
74.8268
jlack-gatkSNP*map_sirenhet
97.0812
99.4593
94.8142
68.9379
90499492904854949324
6.5468
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
84.2998
74.7038
96.7245
58.1245
15386521015385521324
62.1881
gduggal-bwafbSNP*HG002complexvarhet
99.7664
99.7319
99.8010
20.1804
4642521248464384926324
34.9892