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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82351-82400 / 86044 show all
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4153
95.0558
97.8143
50.9442
1405473114052314309
98.4076
qzeng-customSNP*map_l250_m2_e1het
76.4225
66.2804
90.2293
96.3549
348917753463375310
82.6667
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
52.7646
70.1389
42.2890
66.9445
20286436595310
52.1008
gduggal-snapvardSNP*map_l125_m2_e1het
91.4989
96.9163
86.6551
82.4293
28726914283834371310
7.0922
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
45.1741
82.9268
31.0421
68.1047
13628140311310
99.6785
ciseli-customINDEL*map_l125_m2_e0*
67.7061
62.3406
74.0821
90.8144
13698271372480310
64.5833
ciseli-customINDEL*map_l100_m2_e0het
73.2740
70.9580
75.7464
88.9861
16376701649528311
58.9015
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
68.1729
96.6574
52.6555
45.4921
34712347312311
99.6795
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
70.1273
67.6890
72.7479
71.4311
3465165435291322311
23.5250
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.5500
37.4241
46.6984
73.3990
2220371222562575311
12.0777
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
27.6434
24.0260
32.5431
70.1799
148468151313312
99.6805
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
38.9035
36.0279
42.2780
67.7158
361641438598312
52.1739
ciseli-customINDEL*map_l125_m2_e1*
67.9362
62.5618
74.3207
90.8519
13928331395482312
64.7303
raldana-dualsentieonINDELD1_5**
99.4299
99.1168
99.7450
58.6151
1454491296145501372312
83.8710
jpowers-varprowlSNP*map_sirenhet
98.0429
97.8328
98.2539
63.2948
890191972890211582312
19.7219
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
89.7973
90.4000
89.2026
69.9879
27122882875348312
89.6552
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
45.8754
35.9281
63.4398
55.1086
360642616355312
87.8873
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
60.3133
55.2921
66.3376
42.9617
653528672341312
91.4956
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.5452
72.3383
88.3470
65.9371
294211253025399313
78.4461
mlin-fermikitINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6117
94.0740
95.1557
42.5447
63343996325322313
97.2050
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
74.2906
94.9819
61.0017
81.9477
10259542103416611313
4.7345
egarrison-hhgaINDELI6_15HG002compoundhet*
93.4351
91.3742
95.5910
34.6214
80197578022370313
84.5946
hfeng-pmm3INDEL**het
99.4705
99.1923
99.7504
58.0356
1925651568192191481313
65.0728
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.0147
91.6982
94.3696
64.0306
55785055464326313
96.0123
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3211
96.9895
97.6551
52.0760
1337041513368321314
97.8193
qzeng-customSNP*map_l250_m1_e0*
74.6091
62.6419
92.2286
95.4856
452426984486378314
83.0688
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.5750
99.7860
89.8811
59.7231
279862798315314
99.6825
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.1348
99.7788
90.9039
60.3967
315873158316314
99.3671
gduggal-bwaplatINDEL*HG002complexvarhomalt
93.8564
89.6215
98.5114
56.9159
24222280524155365314
86.0274
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.0947
69.5121
97.3091
55.1710
11612509311608321314
97.8193
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.0947
69.5121
97.3091
55.1710
11612509311608321314
97.8193
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
46.8255
38.7947
59.0491
58.6382
103016251155801315
39.3258
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
84.5016
90.8408
78.9894
50.4937
12101221188316315
99.6835
raldana-dualsentieonINDELI6_15HG002compoundhethomalt
16.3588
100.0000
8.9080
58.9623
31031317315
99.3691
gduggal-snapfbINDELD1_5HG002compoundhethet
82.9422
78.7616
87.5915
48.3471
13613676939983315
32.0448
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
93.4534
92.3513
94.5822
43.0987
961179614228815315
38.6503
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4585
97.1390
97.7802
53.9739
1436242314360326315
96.6258
eyeh-varpipeINDEL*HG002compoundhethetalt
52.4540
35.9293
97.1234
60.7545
90471613310973325315
96.9231
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1679
96.6993
97.6410
51.8960
1333045513328322315
97.8261
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
96.0004
95.5487
96.4564
45.2361
90374219037332315
94.8795
astatham-gatkINDELI1_5HG002compoundhet*
96.1407
94.9417
97.3704
66.4075
1173162511738317315
99.3691
anovak-vgSNP*map_sirenhomalt
93.9262
89.1653
99.2241
49.9600
49180597648469379316
83.3773
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
43.8042
29.8151
82.5243
69.3041
170940231700360316
87.7778
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
63.1364
48.1459
91.6819
62.9404
402543354012364316
86.8132
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
63.1364
48.1459
91.6819
62.9404
402543354012364316
86.8132
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3157
96.8617
97.7740
53.9248
1432146414319326316
96.9325
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.9979
73.8865
89.6241
43.4171
290310262885334316
94.6108
dgrover-gatkINDELD1_5**
99.6144
99.5271
99.7018
60.8244
146051694146107437317
72.5400
dgrover-gatkINDELI6_15HG002compoundhet*
94.9104
93.5962
96.2620
37.4707
82145628215319317
99.3730
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6258
94.3116
94.9422
66.8176
63503836401341317
92.9619