PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82251-82300 / 86044 show all
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6836
92.7338
94.6530
63.9970
56414425523312296
94.8718
ckim-isaacINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.7341
89.2791
96.4674
63.8560
13907167013927510296
58.0392
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
57.9234
60.5313
55.5310
45.5422
319208502402297
73.8806
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3799
99.5525
99.2079
75.4457
4805521647847382297
77.7487
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
60.2448
65.3028
55.9140
55.1447
399212468369297
80.4878
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9091
95.9594
97.8778
43.6515
1322855714482314297
94.5860
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
28.4209
18.3007
63.5810
52.0444
2801250522299297
99.3311
eyeh-varpipeINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
28.4209
18.3007
63.5810
52.0444
2801250522299297
99.3311
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8135
98.9459
94.7711
71.2462
5538595528305297
97.3770
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
51.6840
41.4224
68.7044
73.6538
7631079753343297
86.5889
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
71.3852
85.9375
61.0476
58.4323
49581641409297
72.6161
gduggal-snapfbSNP*HG002compoundhethet
75.1230
97.0518
61.2774
50.8228
13760418140278864298
3.3619
eyeh-varpipeINDELI6_15HG002complexvarhet
83.9009
81.8684
86.0369
46.7354
19284271867303298
98.3498
anovak-vgINDEL*map_sirenhet
71.2155
65.8829
77.4874
82.2828
297015383084896298
33.2589
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.0371
93.4243
94.6580
64.2218
56834005564314298
94.9045
ndellapenna-hhgaSNPti**
99.8903
99.8233
99.9574
16.8793
208182536862081847888298
33.5586
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
89.2273
86.8923
91.6913
54.4965
34145153410309298
96.4401
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.5773
96.2462
96.9108
49.8130
1066641610666340299
87.9412
ciseli-customSNPtimap_l150_m0_e0homalt
84.9597
83.8464
86.1028
73.9645
23154462311373299
80.1609
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.8394
89.3309
94.4928
61.1176
54346495319310299
96.4516
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
95.8406
96.8379
94.8635
56.7607
58801925873318299
94.0252
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.6924
96.0989
95.2894
42.1888
64542626453319300
94.0439
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6955
94.4156
94.9771
66.7371
63573766429340300
88.2353
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
78.5748
67.1057
94.7725
26.6989
18348995602309300
97.0874
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
38.4337
40.5674
36.5133
81.1880
5728388651504300
19.9468
ciseli-customSNP*map_l250_m2_e0homalt
80.9434
78.5927
83.4390
87.8922
21115752106418300
71.7703
cchapple-customINDELD1_5**
99.4223
99.1584
99.6877
55.8052
1455101235145535456300
65.7895
ciseli-customINDEL*map_l125_m1_e0*
67.4524
62.0788
73.8444
90.3002
13087991310464300
64.6552
rpoplin-dv42INDELD1_5HG002compoundhethet
90.2551
96.8171
84.5262
76.1853
1673551677307300
97.7199
dgrover-gatkINDELI1_5HG002compoundhet*
96.3058
95.1360
97.5048
66.8717
1175560111762301300
99.6678
ckim-vqsrINDELI1_5HG002compoundhet*
94.7676
92.2629
97.4120
66.1892
1140095611405303301
99.3399
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.7847
96.0993
93.5056
43.8048
99534049949691301
43.5601
qzeng-customSNP*map_l250_m1_e0het
75.1142
64.7950
89.3431
96.3888
308116743060365301
82.4658
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_51to200*
83.2354
82.2465
84.2483
57.4547
17283731642307301
98.0456
ckim-dragenINDEL*HG002complexvar*
99.3944
99.2565
99.5327
58.0987
7636657276037357301
84.3137
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6969
92.8325
94.5775
63.9536
56474365529317301
94.9527
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
82.3435
83.6876
81.0419
74.6270
30325913018706302
42.7762
qzeng-customSNPtv*het
99.3391
99.1721
99.5067
29.7409
58680548995855782903302
10.4030
qzeng-customINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
83.9455
85.0094
82.9080
59.5221
22573983216663302
45.5505
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
87.7736
89.0780
86.5068
60.4550
12561542526394302
76.6497
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.8801
90.1364
95.7959
52.1555
54836007793342302
88.3041
gduggal-snapplatINDELD1_5HG002complexvarhet
82.2897
77.5921
87.5928
61.7499
161124653188782674302
11.2939
ghariani-varprowlSNP*map_sirenhet
98.3861
99.3911
97.4013
64.9618
90437554904402413303
12.5570
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0372
96.1312
97.9605
45.4439
1421357215466322303
94.0994
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
40.7567
52.0900
33.4737
59.2973
162149159316303
95.8861
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.3560
99.6428
97.1020
45.5337
103203710320308303
98.3766
ltrigg-rtg1INDEL*HG002compoundhet*
95.1229
91.7957
98.7003
59.4533
27502245827566363303
83.4711
jmaeng-gatkINDELI6_15*homalt
97.4945
99.7916
95.3008
55.3726
6226136226307303
98.6971