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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
82201-82250 / 86044 show all
jlack-gatkSNP*map_l100_m1_e0*
97.0238
99.1147
95.0193
74.0812
71762641717513761290
7.7107
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
71.5778
68.2094
75.2961
64.2035
899419890292290
99.3151
qzeng-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
86.4441
98.6928
76.9001
45.2692
15121032310290
93.5484
rpoplin-dv42INDELD16_PLUS**
94.4399
93.5879
95.3076
64.2354
63494356337312290
92.9487
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.5656
91.5183
93.6371
69.0667
45754244562310290
93.5484
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5656
91.5183
93.6371
69.0667
45754244562310290
93.5484
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7280
96.4818
99.0068
57.7386
30303110530303304291
95.7237
jlack-gatkSNP*map_l100_m2_e0*
97.0473
99.1293
95.0510
75.5620
73320644733093817291
7.6238
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
58.9966
69.7941
51.0924
33.9623
305132304291291
100.0000
hfeng-pmm1INDEL*HG002compoundhethet
86.5457
82.4866
91.0249
77.7276
33777173144310291
93.8710
gduggal-bwafbSNPtiHG002complexvar*
99.8223
99.7766
99.8681
18.4222
5073011136507384670291
43.4328
eyeh-varpipeINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
25.9640
21.0884
33.7719
34.7639
155580154302292
96.6887
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.9444
77.0743
97.1216
57.5074
14073418614070417292
70.0240
gduggal-bwavardINDELI16_PLUSHG002complexvar*
64.0905
62.4141
65.8596
60.8283
817492816423292
69.0307
gduggal-snapplatSNPtvmap_l150_m2_e0*
92.0132
89.3351
94.8569
86.0094
10144121110144550292
53.0909
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
15.8746
12.3386
22.2513
50.7732
8661185297292
98.3165
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
31.8050
60.7407
21.5426
49.5302
825381295292
98.9831
raldana-dualsentieonINDELD1_5HG002compoundhet*
94.6881
92.0801
97.4481
64.3836
1126696911265295292
98.9831
anovak-vgINDEL*map_l125_m2_e1homalt
76.3517
86.5633
68.2951
84.5478
670104685318292
91.8239
ndellapenna-hhgaINDELD6_15HG002complexvar*
88.9462
85.9864
92.1169
57.7872
45597434569391292
74.6803
jlack-gatkSNP*map_l100_m2_e1*
97.0682
99.1343
95.0864
75.5739
74090647740793828292
7.6280
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5384
98.0960
98.9848
61.0949
3081059830810316292
92.4051
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.1562
93.5723
94.7476
64.3692
56923915574309293
94.8220
dgrover-gatkINDELD1_5HG002compoundhet*
96.6517
95.7826
97.5368
66.6083
1171951611721296293
98.9865
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6423
98.0278
99.2646
73.6782
4731995247111349293
83.9542
eyeh-varpipeSNP*HG002complexvar*
99.8557
99.8989
99.8126
18.3366
7536227636998061314293
22.2983
gduggal-snapplatSNPtvmap_l150_m2_e1*
92.0738
89.4279
94.8810
86.0143
10286121610287555293
52.7928
jpowers-varprowlSNPti*het
99.4145
99.3343
99.4948
22.7953
1273353853412735116466293
4.5314
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9092
98.7644
97.0687
69.5742
2733634227419828294
35.5072
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.6406
75.4390
91.3622
46.4432
29649653226305294
96.3934
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4822
99.9317
99.0367
73.5845
307402130740299294
98.3278
qzeng-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
73.2113
82.3308
65.9106
63.8478
175237619471007294
29.1956
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50het
95.2061
98.4144
92.2003
46.1270
3600583700313294
93.9297
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.3555
90.6219
98.4100
63.4241
41416428641653673294
43.6850
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.3555
90.6219
98.4100
63.4241
41416428641653673294
43.6850
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3646
97.7617
98.9750
61.5381
3070570330705318294
92.4528
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
44.4338
30.6874
80.4889
73.3333
175939731745423294
69.5035
ciseli-customINDELI1_5map_l100_m2_e1*
63.6010
58.1362
70.1998
85.9497
811584808343294
85.7143
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3847
97.8381
98.9375
61.5106
3072967930729330295
89.3939
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.3847
97.8381
98.9375
61.5106
3072967930729330295
89.3939
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
88.7545
83.2610
95.0242
30.5643
13432706092319295
92.4765
jmaeng-gatkINDELI6_15HG002compoundhethomalt
17.2702
100.0000
9.4512
62.3853
31031297295
99.3266
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
47.5294
38.2286
62.8109
62.6047
505816505299296
98.9967
gduggal-bwaplatINDELI6_15**
86.3949
77.4322
97.7041
60.0483
19221560219235452296
65.4867
ckim-gatkINDELD1_5HG002compoundhet*
95.9834
94.5321
97.4800
66.2715
1156666911566299296
98.9967
ckim-vqsrINDELD1_5HG002compoundhet*
95.9661
94.4994
97.4791
66.2791
1156267311562299296
98.9967