PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82151-82200 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | * | map_l125_m2_e0 | homalt | 76.4959 | 86.5007 | 68.5656 | 84.5197 | 660 | 103 | 674 | 309 | 283 | 91.5858 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3690 | 99.6782 | 99.0618 | 71.6714 | 30662 | 99 | 30621 | 290 | 283 | 97.5862 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.2716 | 99.9044 | 96.6913 | 55.0844 | 8358 | 8 | 8358 | 286 | 283 | 98.9510 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.5740 | 97.1061 | 79.7460 | 45.0808 | 302 | 9 | 1193 | 303 | 283 | 93.3993 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4995 | 98.0432 | 98.9602 | 56.0148 | 27707 | 553 | 27695 | 291 | 283 | 97.2509 | |
| ltrigg-rtg2 | SNP | * | * | * | 99.8749 | 99.8935 | 99.8562 | 17.0058 | 3051374 | 3252 | 3051531 | 4395 | 283 | 6.4391 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 75.7234 | 65.8935 | 89.0004 | 54.7661 | 2301 | 1191 | 2306 | 285 | 284 | 99.6491 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 63.8133 | 53.4814 | 79.0931 | 40.7537 | 1252 | 1089 | 1343 | 355 | 284 | 80.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 72.5851 | 97.6063 | 57.7747 | 75.1406 | 9460 | 232 | 9679 | 7074 | 284 | 4.0147 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6349 | 98.9595 | 92.5264 | 70.1656 | 27390 | 288 | 27497 | 2221 | 284 | 12.7870 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | * | 92.3600 | 96.3299 | 88.7044 | 82.4713 | 30683 | 1169 | 30289 | 3857 | 284 | 7.3632 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | * | 95.1804 | 96.2979 | 94.0886 | 74.3752 | 47653 | 1832 | 47192 | 2965 | 284 | 9.5784 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6652 | 92.4180 | 58.5235 | 76.3191 | 451 | 37 | 436 | 309 | 284 | 91.9094 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.7841 | 93.1472 | 98.5746 | 46.7673 | 14680 | 1080 | 25103 | 363 | 284 | 78.2369 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 56.5909 | 40.1432 | 95.8723 | 58.5392 | 4205 | 6270 | 6759 | 291 | 284 | 97.5945 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | * | 97.5865 | 97.1834 | 97.9930 | 76.8491 | 45407 | 1316 | 45407 | 930 | 284 | 30.5376 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.3376 | 91.6367 | 95.1028 | 49.5731 | 10179 | 929 | 9943 | 512 | 284 | 55.4688 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.9422 | 97.7317 | 98.1536 | 61.1398 | 15683 | 364 | 15682 | 295 | 284 | 96.2712 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | het | 76.7738 | 64.8796 | 94.0081 | 91.3630 | 5361 | 2902 | 5350 | 341 | 285 | 83.5777 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8686 | 65.5405 | 21.0526 | 51.2162 | 97 | 51 | 76 | 285 | 285 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.0066 | 22.3881 | 62.7851 | 75.4350 | 540 | 1872 | 523 | 310 | 285 | 91.9355 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | het | 70.9283 | 88.2707 | 59.2814 | 63.1347 | 587 | 78 | 594 | 408 | 285 | 69.8529 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e1 | * | 97.5993 | 97.1950 | 98.0069 | 76.8922 | 45878 | 1324 | 45878 | 933 | 285 | 30.5466 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | * | 91.7958 | 89.0029 | 94.7697 | 85.0160 | 9712 | 1200 | 9712 | 536 | 286 | 53.3582 | |
| ckim-dragen | INDEL | D1_5 | * | homalt | 99.6542 | 99.8998 | 99.4098 | 63.4062 | 48877 | 49 | 48847 | 290 | 286 | 98.6207 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 63.6732 | 58.1871 | 70.3014 | 85.8912 | 796 | 572 | 793 | 335 | 286 | 85.3731 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 49.7630 | 39.5223 | 67.1670 | 73.6334 | 728 | 1114 | 716 | 350 | 286 | 81.7143 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 71.5090 | 85.4985 | 61.4537 | 75.3529 | 566 | 96 | 558 | 350 | 286 | 81.7143 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.6177 | 84.7222 | 69.9283 | 81.0889 | 1098 | 198 | 1365 | 587 | 286 | 48.7223 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.8529 | 82.0562 | 83.6653 | 62.9041 | 1724 | 377 | 1680 | 328 | 287 | 87.5000 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e1 | * | 92.4051 | 96.3396 | 88.7794 | 82.5294 | 31031 | 1179 | 30628 | 3871 | 287 | 7.4141 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 53.5363 | 39.1660 | 84.5632 | 59.4976 | 1869 | 2903 | 1868 | 341 | 287 | 84.1642 | |
| gduggal-snapfb | INDEL | I6_15 | * | hetalt | 66.8619 | 57.6892 | 79.5031 | 50.4107 | 4933 | 3618 | 1152 | 297 | 287 | 96.6330 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9868 | 95.2804 | 94.6949 | 56.1929 | 10942 | 542 | 10942 | 613 | 287 | 46.8189 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.2633 | 93.9024 | 34.3158 | 41.8605 | 77 | 5 | 163 | 312 | 287 | 91.9872 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | het | 91.9870 | 91.5747 | 92.4029 | 88.3430 | 6641 | 611 | 6641 | 546 | 288 | 52.7473 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.3936 | 42.2407 | 65.6103 | 66.2441 | 558 | 763 | 559 | 293 | 288 | 98.2935 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 62.2829 | 56.8163 | 68.9135 | 42.3099 | 671 | 510 | 685 | 309 | 288 | 93.2039 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.8613 | 83.4547 | 69.5344 | 53.8102 | 802 | 159 | 687 | 301 | 288 | 95.6811 | |
| jlack-gatk | SNP | ti | * | het | 99.6581 | 99.9316 | 99.3861 | 24.9292 | 1281014 | 877 | 1280960 | 7913 | 288 | 3.6396 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.9611 | 84.4804 | 91.7409 | 50.5473 | 3756 | 690 | 3399 | 306 | 289 | 94.4444 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.5741 | 90.2916 | 94.9750 | 58.0257 | 14834 | 1595 | 15952 | 844 | 289 | 34.2417 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 48.9503 | 37.9479 | 68.9379 | 70.3682 | 699 | 1143 | 688 | 310 | 289 | 93.2258 | |
| jmaeng-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2695 | 99.3226 | 99.2164 | 76.1399 | 47944 | 327 | 47736 | 377 | 289 | 76.6578 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | het | 92.0469 | 91.6576 | 92.4396 | 88.3528 | 6735 | 613 | 6737 | 551 | 289 | 52.4501 | |
| gduggal-snapvard | INDEL | * | segdup | het | 85.9532 | 91.8827 | 80.7426 | 95.9123 | 1347 | 119 | 1631 | 389 | 289 | 74.2931 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8403 | 19.6198 | 42.4704 | 32.3024 | 258 | 1057 | 251 | 340 | 290 | 85.2941 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 35.5751 | 30.6061 | 42.4704 | 32.1470 | 101 | 229 | 251 | 340 | 290 | 85.2941 | |