PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8101-8150 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.3874 | 77.6000 | 100.0000 | 66.6667 | 97 | 28 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 94.3038 | 28 | 5 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m1_e0 | hetalt | 86.2385 | 75.8065 | 100.0000 | 90.2527 | 94 | 30 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m2_e0 | hetalt | 85.8447 | 75.2000 | 100.0000 | 91.2621 | 94 | 31 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l100_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.4013 | 99 | 33 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m0_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 97.6190 | 8 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.2000 | 33 | 9 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m2_e1 | hetalt | 86.8421 | 76.7442 | 100.0000 | 93.2806 | 33 | 10 | 17 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m0_e0 | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 14 | 7 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e1 | hetalt | 78.9474 | 65.2174 | 100.0000 | 96.5854 | 15 | 8 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | map_l250_m0_e0 | homalt | 64.8649 | 48.0000 | 100.0000 | 98.4526 | 12 | 13 | 24 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 99.1870 | 5 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7444 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.7778 | 5 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_siren | hetalt | 87.7273 | 78.1377 | 100.0000 | 88.1671 | 193 | 54 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdup | hetalt | 89.8305 | 81.5385 | 100.0000 | 96.1039 | 106 | 24 | 24 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9977 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9969 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 2.6895 | 75.5383 | 0 | 0 | 11 | 398 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 1.7730 | 70.9278 | 0 | 0 | 5 | 277 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | * | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 4.7244 | 81.1852 | 0 | 0 | 6 | 121 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 13.5135 | 79.8913 | 0 | 0 | 10 | 64 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 9.7561 | 77.0950 | 0 | 0 | 4 | 37 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 18.1818 | 81.8681 | 0 | 0 | 6 | 27 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 3.0769 | 55.1724 | 0 | 0 | 2 | 63 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 4.7619 | 50.0000 | 0 | 0 | 2 | 40 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.4074 | 0 | 0 | 0 | 23 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 99.0909 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 98.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 60.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 94.5455 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||