PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80051-80100 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | * | 77.5709 | 68.5921 | 89.2545 | 77.9440 | 1330 | 609 | 1329 | 160 | 138 | 86.2500 | |
| qzeng-custom | SNP | tv | map_l150_m0_e0 | het | 79.7044 | 70.2075 | 92.1723 | 93.6869 | 1996 | 847 | 1990 | 169 | 138 | 81.6568 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.1064 | 76.2066 | 86.6795 | 41.5020 | 900 | 281 | 898 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.2757 | 91.7744 | 92.7824 | 61.6372 | 1774 | 159 | 1774 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.7944 | 80.4054 | 43.9024 | 68.0934 | 119 | 29 | 108 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_siren | * | 99.6562 | 99.5227 | 99.7902 | 53.3616 | 99876 | 479 | 99868 | 210 | 138 | 65.7143 | |
| gduggal-bwaplat | INDEL | I6_15 | * | hetalt | 85.2525 | 75.5818 | 97.7610 | 47.7759 | 6463 | 2088 | 6462 | 148 | 138 | 93.2432 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 81.8829 | 73.3939 | 92.5926 | 62.2269 | 1131 | 410 | 1825 | 146 | 139 | 95.2055 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.6420 | 95.6229 | 93.6811 | 78.6041 | 18722 | 857 | 18784 | 1267 | 139 | 10.9708 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.6420 | 95.6229 | 93.6811 | 78.6041 | 18722 | 857 | 18784 | 1267 | 139 | 10.9708 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 51.2934 | 59.7015 | 44.9612 | 67.1338 | 120 | 81 | 116 | 142 | 139 | 97.8873 | |
| gduggal-bwavard | SNP | * | map_l150_m1_e0 | * | 94.8478 | 97.7523 | 92.1110 | 81.9172 | 29921 | 688 | 29540 | 2530 | 139 | 5.4941 | |
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | het | 95.5858 | 97.2580 | 93.9701 | 77.5354 | 29121 | 821 | 28877 | 1853 | 139 | 7.5014 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.8048 | 89.3111 | 92.3494 | 45.1133 | 3267 | 391 | 4092 | 339 | 139 | 41.0029 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5527 | 99.8046 | 97.3318 | 50.7832 | 5107 | 10 | 5107 | 140 | 139 | 99.2857 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6771 | 99.7888 | 97.5899 | 57.2270 | 5669 | 12 | 5669 | 140 | 139 | 99.2857 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 79.9976 | 76.6057 | 83.7037 | 88.2507 | 1467 | 448 | 1469 | 286 | 139 | 48.6014 | |
| ciseli-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 30.2740 | 87.3110 | 0 | 0 | 221 | 509 | 139 | 27.3084 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4040 | 96.4646 | 92.4295 | 77.5992 | 2101 | 77 | 1868 | 153 | 139 | 90.8497 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.2601 | 92.3740 | 88.2408 | 73.6079 | 2786 | 230 | 2844 | 379 | 139 | 36.6755 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9950 | 99.9034 | 98.1030 | 36.7067 | 7240 | 7 | 7240 | 140 | 139 | 99.2857 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 74.0703 | 72.3684 | 75.8542 | 64.2217 | 660 | 252 | 666 | 212 | 139 | 65.5660 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6591 | 99.7822 | 99.5363 | 71.5494 | 30694 | 67 | 30694 | 143 | 139 | 97.2028 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 67.6742 | 98.1523 | 51.6392 | 81.2351 | 6534 | 123 | 6647 | 6225 | 139 | 2.2329 | |
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | het | 92.4877 | 97.3990 | 88.0480 | 78.4967 | 15016 | 401 | 14962 | 2031 | 139 | 6.8439 | |
| ltrigg-rtg2 | SNP | * | * | homalt | 99.9694 | 99.9515 | 99.9872 | 17.0159 | 1179585 | 572 | 1179505 | 151 | 139 | 92.0530 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8172 | 98.5296 | 99.1064 | 71.0184 | 45030 | 672 | 45029 | 406 | 140 | 34.4828 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8172 | 98.5296 | 99.1064 | 71.0184 | 45030 | 672 | 45029 | 406 | 140 | 34.4828 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | * | 98.5659 | 98.1119 | 99.0241 | 34.3630 | 17148 | 330 | 17148 | 169 | 140 | 82.8402 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.7848 | 41.9187 | 67.7249 | 51.1628 | 402 | 557 | 384 | 183 | 140 | 76.5027 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4480 | 96.6024 | 92.3875 | 77.6266 | 2104 | 74 | 1869 | 154 | 140 | 90.9091 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.8288 | 92.9433 | 96.7925 | 52.5751 | 3622 | 275 | 4617 | 153 | 140 | 91.5033 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.6527 | 80.4403 | 87.1324 | 45.1060 | 950 | 231 | 948 | 140 | 140 | 100.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | * | 97.2860 | 96.5605 | 98.0225 | 78.7128 | 19034 | 678 | 19034 | 384 | 140 | 36.4583 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | * | 97.3631 | 96.6654 | 98.0710 | 80.0739 | 19828 | 684 | 19828 | 390 | 140 | 35.8974 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | * | 97.6510 | 97.6471 | 97.6549 | 73.7409 | 24444 | 589 | 24444 | 587 | 140 | 23.8501 | |
| jli-custom | INDEL | I1_5 | * | homalt | 99.8065 | 99.8527 | 99.7603 | 53.8126 | 60339 | 89 | 60343 | 145 | 140 | 96.5517 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.1180 | 67.8700 | 94.8349 | 76.6136 | 8498 | 4023 | 8501 | 463 | 140 | 30.2376 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 48.6766 | 60.9756 | 40.5063 | 39.2308 | 25 | 16 | 96 | 141 | 140 | 99.2908 | |
| egarrison-hhga | SNP | * | HG002complexvar | homalt | 99.8875 | 99.8351 | 99.9400 | 19.8887 | 288098 | 476 | 288126 | 173 | 140 | 80.9249 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 17.4295 | 10.9553 | 42.6117 | 84.6357 | 125 | 1016 | 124 | 167 | 140 | 83.8323 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| gduggal-snapfb | INDEL | D1_5 | * | hetalt | 84.1984 | 78.0771 | 91.3611 | 79.2100 | 7999 | 2246 | 3289 | 311 | 140 | 45.0161 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.5968 | 97.3744 | 82.9698 | 74.5108 | 4710 | 127 | 4755 | 976 | 140 | 14.3443 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | * | 97.9382 | 98.3970 | 97.4836 | 73.1519 | 21422 | 349 | 21423 | 553 | 140 | 25.3165 | |
| gduggal-snapplat | INDEL | I1_5 | HG002complexvar | homalt | 83.8960 | 77.5134 | 91.4241 | 57.4270 | 10424 | 3024 | 10586 | 993 | 140 | 14.0987 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.6921 | 93.8506 | 82.2921 | 78.6557 | 9096 | 596 | 8997 | 1936 | 140 | 7.2314 | |
| rpoplin-dv42 | INDEL | I16_PLUS | * | * | 94.2741 | 91.2655 | 97.4879 | 59.7696 | 5820 | 557 | 5821 | 150 | 140 | 93.3333 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | het | 95.2550 | 99.0419 | 91.7470 | 82.2690 | 18091 | 175 | 18087 | 1627 | 140 | 8.6048 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | het | 95.3314 | 99.0570 | 91.8760 | 83.3511 | 18698 | 178 | 18694 | 1653 | 140 | 8.4695 | |