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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
79101-79150 / 86044 show all
gduggal-bwaplatSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
89.3508
81.7668
98.4855
74.7866
28961645829002446106
23.7668
gduggal-bwafbSNPtimap_l100_m1_e0*
99.1029
99.1050
99.1009
66.4175
4750242947504431106
24.5940
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8920
97.4192
92.4926
87.6892
40391074078331106
32.0242
jmaeng-gatkSNP*HG002complexvar*
99.5566
99.1508
99.9656
19.5091
7479756406747823257106
41.2451
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2262
95.8879
96.5669
62.8612
30781323066109106
97.2477
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.3323
30.1494
83.7121
76.2590
6661543663129106
82.1705
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
asubramanian-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
97.0792
98.2071
95.9770
63.3202
2684492672112106
94.6429
bgallagher-sentieonINDELD16_PLUSHG002compoundhet*
95.0525
94.7886
95.3179
35.3692
22191222219109106
97.2477
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3882
96.1994
96.5777
62.9694
30881223076109106
97.2477
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
91.5902
99.5017
84.8442
51.7430
5993599107106
99.0654
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5983
99.6119
99.5848
74.9525
3310712933101138106
76.8116
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.8499
98.2717
97.4317
68.9817
3696654173110107
97.2727
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.8499
98.2717
97.4317
68.9817
3696654173110107
97.2727
anovak-vgINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
41.7184
27.7293
84.1930
71.7265
3819931518285107
37.5439
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
43.5378
41.1765
46.1864
59.0278
2130109127107
84.2520
ciseli-customINDEL*map_l125_m2_e0homalt
67.2566
59.7641
76.8971
88.5455
456307456137107
78.1022
ciseli-customINDEL*map_l125_m2_e1homalt
67.5872
60.0775
77.2425
88.5833
465309465137107
78.1022
ckim-dragenSNPtimap_l100_m2_e0*
98.6738
99.2954
98.0599
68.9474
4861634548624962107
11.1227
ciseli-customINDELI1_5map_l150_m1_e0het
62.5043
64.2140
60.8833
91.5127
192107193124107
86.2903
ciseli-customINDELI1_5map_l150_m2_e0het
62.9373
64.4013
61.5385
92.2212
199110200125107
85.6000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_quadTR_11to50*
92.1810
97.5637
87.3613
59.2270
17740443175572540107
4.2126
gduggal-snapvardSNPtimap_l150_m0_e0*
89.0696
94.6444
84.1150
85.4263
744042173711392107
7.6868
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
28.4088
28.0519
28.7749
80.0908
108277202500107
21.4000
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
82.1159
98.1982
70.5600
84.9325
4368441184107
58.1522
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
34.7483
93.6728
21.3304
80.5514
12148212734695107
2.2790
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9984
98.8832
99.1137
59.5275
1558417615433138107
77.5362
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.9582
94.9341
97.0045
63.7624
36731963627112107
95.5357
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.3132
95.4134
95.2131
38.5261
45352184535228107
46.9298
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
92.0843
97.2973
87.4016
37.3944
68419777112107
95.5357
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.2242
97.7347
98.7186
47.5188
1160626911787153107
69.9346
qzeng-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
83.2079
85.6274
80.9215
46.7151
11261891247294107
36.3946
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
62.0349
81.0976
50.2283
77.7439
13331110109107
98.1651
ckim-isaacINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.1246
82.0664
84.2105
65.4096
1112243896168107
63.6905
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.2190
99.9172
98.5304
36.2675
724167241108107
99.0741
gduggal-bwafbINDELD16_PLUSHG002complexvar*
83.1933
75.8977
92.0405
54.5245
12473961272110107
97.2727
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.6625
90.2806
95.1736
68.0131
22202392879146107
73.2877
gduggal-bwafbSNP*map_l100_m0_e0*
98.7063
98.7333
98.6792
70.9309
3242541632426434107
24.6544
gduggal-bwafbSNP*map_l150_m1_e0*
98.6339
98.5952
98.6726
76.5153
3017943030179406107
26.3547
gduggal-bwafbSNP*map_l150_m2_e0*
98.6575
98.6343
98.6808
78.1008
3141743531417420107
25.4762
gduggal-bwavardSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.6816
97.8606
97.5032
50.0471
1779438917573450107
23.7778
gduggal-bwavardSNPtimap_l125_m2_e0het
94.6336
97.6319
91.8139
83.0438
18429447182931631107
6.5604
gduggal-bwavardSNPtimap_l125_m2_e1het
94.6705
97.6529
91.8649
83.0811
18639448184971638107
6.5324
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
78.5332
98.1982
65.4303
85.7535
4368441233107
45.9227
ltrigg-rtg1INDEL**hetalt
95.1862
91.1955
99.5422
68.0582
23015222223702109107
98.1651
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5319
99.4945
99.5693
75.4597
3306816833062143107
74.8252
jli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0957
93.3062
96.9553
51.5459
36662633662115107
93.0435