PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79001-79050 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 80.0682 | 72.8027 | 88.9447 | 68.9160 | 1756 | 656 | 885 | 110 | 104 | 94.5455 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 70.3339 | 57.7444 | 89.9436 | 58.0772 | 384 | 281 | 957 | 107 | 104 | 97.1963 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | * | 83.5998 | 73.9721 | 96.1087 | 66.0264 | 3922 | 1380 | 3927 | 159 | 104 | 65.4088 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.8869 | 95.0176 | 94.7566 | 72.8903 | 4596 | 241 | 4554 | 252 | 104 | 41.2698 | |
| ndellapenna-hhga | INDEL | D16_PLUS | * | homalt | 92.1150 | 94.2080 | 90.1130 | 60.6404 | 1594 | 98 | 1595 | 175 | 104 | 59.4286 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8254 | 98.0798 | 97.5723 | 79.1147 | 30545 | 598 | 30586 | 761 | 104 | 13.6662 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8254 | 98.0798 | 97.5723 | 79.1147 | 30545 | 598 | 30586 | 761 | 104 | 13.6662 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | * | 64.8581 | 52.4858 | 84.8624 | 85.1067 | 739 | 669 | 740 | 132 | 104 | 78.7879 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | * | 97.4197 | 98.0724 | 96.7757 | 78.9680 | 12516 | 246 | 12516 | 417 | 104 | 24.9400 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.5070 | 99.9434 | 91.4477 | 66.7295 | 1766 | 1 | 1775 | 166 | 104 | 62.6506 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.4193 | 63.9344 | 75.9336 | 65.0725 | 312 | 176 | 366 | 116 | 104 | 89.6552 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | * | 91.6730 | 96.6093 | 87.2166 | 82.7232 | 11112 | 390 | 11080 | 1624 | 104 | 6.4039 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 50.1059 | 37.3855 | 75.9467 | 75.6447 | 1224 | 2050 | 1083 | 343 | 104 | 30.3207 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| rpoplin-dv42 | SNP | tv | * | het | 99.9398 | 99.9275 | 99.9522 | 22.4174 | 591267 | 429 | 591187 | 283 | 104 | 36.7491 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4377 | 98.0757 | 98.8024 | 44.1799 | 3211 | 63 | 9405 | 114 | 104 | 91.2281 | |
| cchapple-custom | INDEL | I1_5 | HG002complexvar | * | 99.1800 | 98.7291 | 99.6350 | 52.8581 | 32939 | 424 | 31939 | 117 | 104 | 88.8889 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | homalt | 66.8206 | 59.2896 | 76.5432 | 87.7564 | 434 | 298 | 434 | 133 | 104 | 78.1955 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.6452 | 99.7262 | 99.5644 | 75.3068 | 33145 | 91 | 33139 | 145 | 104 | 71.7241 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 89.1674 | 84.1986 | 94.7593 | 66.6240 | 2238 | 420 | 2224 | 123 | 104 | 84.5528 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | het | 95.7486 | 95.1228 | 96.3826 | 81.5656 | 7860 | 403 | 7860 | 295 | 104 | 35.2542 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.1312 | 95.1667 | 97.1154 | 62.9013 | 3682 | 187 | 3636 | 108 | 104 | 96.2963 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4635 | 95.4566 | 97.4919 | 64.1585 | 4244 | 202 | 4198 | 108 | 104 | 96.2963 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1287 | 97.8680 | 98.3908 | 64.4221 | 8217 | 179 | 8193 | 134 | 104 | 77.6119 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 83.9922 | 90.3153 | 78.4965 | 79.8804 | 401 | 43 | 449 | 123 | 104 | 84.5528 | |
| astatham-gatk | INDEL | D16_PLUS | * | * | 97.8775 | 98.0100 | 97.7454 | 70.7802 | 6649 | 135 | 6633 | 153 | 104 | 67.9739 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2879 | 97.3995 | 97.1766 | 75.1789 | 4869 | 130 | 4853 | 141 | 104 | 73.7589 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2879 | 97.3995 | 97.1766 | 75.1789 | 4869 | 130 | 4853 | 141 | 104 | 73.7589 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8560 | 99.1874 | 98.5268 | 58.9697 | 7324 | 60 | 7290 | 109 | 104 | 95.4128 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0424 | 98.7834 | 99.3028 | 71.2490 | 45146 | 556 | 45149 | 317 | 104 | 32.8076 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0424 | 98.7834 | 99.3028 | 71.2490 | 45146 | 556 | 45149 | 317 | 104 | 32.8076 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.8906 | 94.5652 | 97.2537 | 40.0019 | 6351 | 365 | 6268 | 177 | 104 | 58.7571 | |
| ckim-vqsr | INDEL | D16_PLUS | * | * | 97.9266 | 97.9363 | 97.9170 | 71.5505 | 6644 | 140 | 6628 | 141 | 105 | 74.4681 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2658 | 97.2995 | 97.2323 | 75.7006 | 4864 | 135 | 4848 | 138 | 105 | 76.0870 | |
| ckim-vqsr | INDEL | D1_5 | HG002compoundhet | het | 96.1223 | 98.2639 | 94.0720 | 78.9357 | 1698 | 30 | 1698 | 107 | 105 | 98.1308 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0829 | 93.1978 | 97.0458 | 62.0799 | 3713 | 271 | 3712 | 113 | 105 | 92.9204 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8983 | 99.1544 | 98.6435 | 64.3687 | 8325 | 71 | 8290 | 114 | 105 | 92.1053 | |
| ckim-gatk | INDEL | D1_5 | HG002compoundhet | het | 96.2104 | 98.4375 | 94.0819 | 78.9081 | 1701 | 27 | 1701 | 107 | 105 | 98.1308 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.0854 | 93.2480 | 96.9966 | 62.0553 | 3715 | 269 | 3714 | 115 | 105 | 91.3043 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9346 | 99.2616 | 98.6098 | 64.3360 | 8334 | 62 | 8299 | 117 | 105 | 89.7436 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 53.2420 | 85.0543 | 38.7490 | 79.7595 | 939 | 165 | 985 | 1557 | 105 | 6.7437 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | homalt | 77.9222 | 74.8832 | 81.2183 | 87.6682 | 641 | 215 | 640 | 148 | 105 | 70.9459 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.5743 | 43.1856 | 70.5446 | 64.5614 | 263 | 346 | 285 | 119 | 105 | 88.2353 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1374 | 97.6583 | 98.6213 | 37.9185 | 2669 | 64 | 8083 | 113 | 105 | 92.9204 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 68.7500 | 83.7563 | 58.3039 | 53.7582 | 165 | 32 | 165 | 118 | 105 | 88.9831 | |
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | hetalt | 70.7588 | 57.7252 | 91.3944 | 38.7805 | 4928 | 3609 | 1147 | 108 | 105 | 97.2222 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.3098 | 85.7592 | 86.8676 | 76.1917 | 819 | 136 | 807 | 122 | 105 | 86.0656 | |