PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77901-77950 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | map_l150_m0_e0 | * | 95.9984 | 95.3950 | 96.6095 | 81.4997 | 7499 | 362 | 7494 | 263 | 77 | 29.2776 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 12.6208 | 7.7147 | 34.6667 | 87.4161 | 53 | 634 | 52 | 98 | 77 | 78.5714 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6669 | 63.6190 | 84.7150 | 61.4963 | 668 | 382 | 654 | 118 | 77 | 65.2542 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6669 | 99.5017 | 88.4786 | 52.7565 | 599 | 3 | 599 | 78 | 77 | 98.7179 | |
| cchapple-custom | INDEL | D6_15 | HG002complexvar | het | 97.1892 | 96.5064 | 97.8818 | 52.6751 | 3011 | 109 | 3974 | 86 | 77 | 89.5349 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 53.8849 | 51.2397 | 56.8182 | 60.5970 | 124 | 118 | 150 | 114 | 77 | 67.5439 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | het | 70.0428 | 89.8305 | 57.3991 | 79.1978 | 53 | 6 | 128 | 95 | 77 | 81.0526 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.7447 | 84.4675 | 83.0341 | 89.9808 | 5623 | 1034 | 5643 | 1153 | 77 | 6.6782 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.0780 | 79.3651 | 84.9829 | 70.4935 | 500 | 130 | 498 | 88 | 77 | 87.5000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9642 | 97.6007 | 96.3360 | 64.2948 | 2156 | 53 | 2156 | 82 | 77 | 93.9024 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.2099 | 92.3698 | 63.4269 | 72.4538 | 1259 | 104 | 1266 | 730 | 77 | 10.5479 | |
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | * | 91.7859 | 94.3996 | 89.3130 | 93.6193 | 1989 | 118 | 1989 | 238 | 77 | 32.3529 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | het | 91.2339 | 97.9403 | 85.3870 | 92.0826 | 1379 | 29 | 1379 | 236 | 77 | 32.6271 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.7128 | 96.9359 | 81.7757 | 44.7028 | 348 | 11 | 350 | 78 | 77 | 98.7179 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.5922 | 88.6792 | 96.8663 | 47.5010 | 2444 | 312 | 2442 | 79 | 77 | 97.4684 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.9369 | 89.2961 | 96.8873 | 47.7240 | 2461 | 295 | 2459 | 79 | 77 | 97.4684 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.6125 | 96.9110 | 96.3159 | 71.1607 | 3451 | 110 | 3451 | 132 | 77 | 58.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8647 | 90.8347 | 86.9783 | 67.1961 | 555 | 56 | 521 | 78 | 77 | 98.7179 | |
| rpoplin-dv42 | INDEL | I1_5 | * | homalt | 99.6318 | 99.4026 | 99.8620 | 52.4571 | 60067 | 361 | 60064 | 83 | 77 | 92.7711 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4502 | 93.0451 | 95.8984 | 70.3618 | 1980 | 148 | 1964 | 84 | 78 | 92.8571 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | homalt | 98.4034 | 99.1440 | 97.6737 | 43.8897 | 3359 | 29 | 3359 | 80 | 78 | 97.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | * | 68.2636 | 57.4739 | 84.0407 | 76.2404 | 496 | 367 | 495 | 94 | 78 | 82.9787 | |
| ndellapenna-hhga | INDEL | * | map_siren | * | 97.7903 | 97.6113 | 97.9700 | 96.5183 | 7233 | 177 | 7239 | 150 | 78 | 52.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | * | 89.2166 | 81.7563 | 98.1753 | 78.5878 | 59194 | 13209 | 59183 | 1100 | 78 | 7.0909 | |
| jpowers-varprowl | INDEL | I16_PLUS | * | homalt | 77.5728 | 66.5599 | 92.9527 | 53.9441 | 1039 | 522 | 1042 | 79 | 78 | 98.7342 | |
| ltrigg-rtg1 | INDEL | D1_5 | HG002compoundhet | * | 96.8842 | 94.7609 | 99.1047 | 63.0486 | 11594 | 641 | 11623 | 105 | 78 | 74.2857 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 81.5062 | 79.9189 | 83.1579 | 59.0870 | 394 | 99 | 395 | 80 | 78 | 97.5000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.1931 | 94.0741 | 76.1905 | 60.9756 | 254 | 16 | 256 | 80 | 78 | 97.5000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.7361 | 97.4125 | 88.4882 | 79.5170 | 640 | 17 | 638 | 83 | 78 | 93.9759 | |
| bgallagher-sentieon | SNP | tv | * | * | 99.8908 | 99.9655 | 99.8163 | 21.9055 | 969355 | 335 | 969269 | 1784 | 78 | 4.3722 | |
| anovak-vg | SNP | * | map_l125_m1_e0 | homalt | 89.5021 | 81.4552 | 99.3132 | 65.1171 | 13770 | 3135 | 13593 | 94 | 78 | 82.9787 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.5362 | 98.9362 | 90.5109 | 61.6962 | 744 | 8 | 744 | 78 | 78 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | homalt | 78.8406 | 82.6748 | 75.3463 | 87.5988 | 272 | 57 | 272 | 89 | 78 | 87.6404 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | * | 97.1567 | 99.0474 | 95.3368 | 45.3099 | 8838 | 85 | 7176 | 351 | 78 | 22.2222 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3102 | 95.9453 | 98.7144 | 44.6603 | 6460 | 273 | 6834 | 89 | 78 | 87.6404 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | het | 98.5978 | 98.7179 | 98.4780 | 75.9201 | 18634 | 242 | 18634 | 288 | 78 | 27.0833 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | het | 98.6133 | 98.7321 | 98.4947 | 75.9784 | 18845 | 242 | 18845 | 288 | 78 | 27.0833 | |
| gduggal-bwavard | SNP | ti | HG002complexvar | homalt | 98.4467 | 96.9948 | 99.9428 | 17.4866 | 187650 | 5814 | 183526 | 105 | 78 | 74.2857 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4064 | 90.9774 | 82.2727 | 51.2195 | 363 | 36 | 362 | 78 | 78 | 100.0000 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | het | 96.9467 | 98.6218 | 95.3275 | 45.8199 | 9374 | 131 | 9446 | 463 | 78 | 16.8467 | |
| egarrison-hhga | SNP | * | map_siren | * | 99.6583 | 99.4385 | 99.8791 | 53.8224 | 145407 | 821 | 145408 | 176 | 78 | 44.3182 | |
| egarrison-hhga | SNP | tv | HG002complexvar | * | 99.7884 | 99.6287 | 99.9487 | 21.8626 | 245238 | 914 | 245267 | 126 | 78 | 61.9048 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.0643 | 66.6667 | 88.5463 | 95.7295 | 2 | 1 | 804 | 104 | 78 | 75.0000 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | * | 99.4999 | 99.4779 | 99.5218 | 66.8041 | 72025 | 378 | 72014 | 346 | 78 | 22.5434 | |
| egarrison-hhga | INDEL | * | map_siren | * | 97.8660 | 97.7598 | 97.9724 | 96.4159 | 7244 | 166 | 7248 | 150 | 78 | 52.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.8228 | 89.7533 | 85.9736 | 75.4953 | 473 | 54 | 521 | 85 | 78 | 91.7647 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.5937 | 99.5017 | 88.3481 | 52.5210 | 599 | 3 | 599 | 79 | 78 | 98.7342 | |
| jlack-gatk | INDEL | * | * | hetalt | 94.2358 | 89.4005 | 99.6240 | 58.0561 | 22562 | 2675 | 22786 | 86 | 78 | 90.6977 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 | |