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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1549 1550 1551 1552 1553 1554 1555 1556 1557 ... 1720 1721 » 77601-77650 / 86044 show all
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e1	het	76.7442	97.7778	63.1579	89.8936	132	3	132	77	71	92.2078
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	55.0492	45.3608	70.0000	75.3208	176	212	175	75	71	94.6667
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.3392	96.1587	98.5491	67.9366	5382	215	5366	79	71	89.8734
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	85.5705	97.7901	76.0656	82.2571	354	8	232	73	71	97.2603
hfeng-pmm2	INDEL	D1_5	*	het	99.5604	99.3114	99.8107	56.3200	86971	603	86977	165	71	43.0303
hfeng-pmm2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	97.1165	95.7477	98.5251	68.8562	5359	238	5344	80	71	88.7500
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	92.9690	88.5553	97.8458	55.3644	3451	446	3452	76	71	93.4211
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	97.6338	95.8574	99.4771	65.4659	15411	666	15411	81	71	87.6543
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	97.6338	95.8574	99.4771	65.4659	15411	666	15411	81	71	87.6543
rpoplin-dv42	SNP	ti	HG002complexvar	homalt	99.9574	99.9530	99.9617	18.4113	193372	91	193367	74	72	97.2973
mlin-fermikit	SNP	ti	map_l250_m0_e0	*	41.9162	28.1022	82.4411	81.5488	385	985	385	82	72	87.8049
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.1236	82.5688	83.6858	64.5989	360	76	1108	216	72	33.3333
ndellapenna-hhga	INDEL	D6_15	HG002complexvar	homalt	93.9581	97.7759	90.4272	60.3886	1143	26	1143	121	72	59.5041
ltrigg-rtg2	SNP	tv	HG002complexvar	*	99.8482	99.7705	99.9260	21.7021	245590	565	245834	182	72	39.5604
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	91.2274	96.9697	86.1272	74.9275	448	14	447	72	72	100.0000
qzeng-custom	SNP	*	map_l150_m2_e1	homalt	80.8266	68.2422	99.1019	73.2731	8071	3756	7945	72	72	100.0000
raldana-dualsentieon	INDEL	*	HG002complexvar	het	98.7829	97.8101	99.7752	56.2974	45200	1012	44831	101	72	71.2871
jli-custom	INDEL	D6_15	HG002compoundhet	homalt	40.0000	100.0000	25.0000	72.0117	24	0	24	72	72	100.0000
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.1965	97.0144	99.4078	64.7466	15597	480	15611	93	72	77.4194
jli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.1965	97.0144	99.4078	64.7466	15597	480	15611	93	72	77.4194
jpowers-varprowl	SNP	tv	map_siren	homalt	99.3790	99.3213	99.4367	59.4375	17123	117	17123	97	72	74.2268
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	95.7830	98.8722	92.8811	83.4809	1315	15	1109	85	72	84.7059
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.0004	93.1933	98.9817	26.3036	7544	551	7582	78	72	92.3077
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.8358	99.1988	98.4754	71.0733	16839	136	16083	249	72	28.9157
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	91.7011	87.0959	96.8206	45.2421	9672	1433	2223	73	72	98.6301
gduggal-bwafb	INDEL	D16_PLUS	HG002complexvar	homalt	81.9487	86.8512	77.5701	62.8472	251	38	249	72	72	100.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.2475	93.6213	99.0253	42.3352	6913	471	12598	124	72	58.0645
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.6431	96.1084	99.2277	42.1750	10002	405	15032	117	72	61.5385
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	76.5888	63.9069	95.5499	83.7077	3736	2110	3736	174	72	41.3793
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	81.6793	71.3911	95.4321	75.7937	5994	2402	5996	287	72	25.0871
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	76.5888	63.9069	95.5499	83.7077	3736	2110	3736	174	72	41.3793
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.6607	91.0166	98.6088	31.6968	6079	600	5954	84	72	85.7143
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	50.2734	33.9647	96.7108	42.6363	1847	3591	2117	72	72	100.0000
gduggal-bwavard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	86.3919	88.4669	84.4120	88.2444	1258	164	1213	224	72	32.1429
gduggal-bwavard	SNP	tv	map_l125_m1_e0	*	94.9586	97.9708	92.1260	78.9367	15691	325	15643	1337	72	5.3852
egarrison-hhga	INDEL	D16_PLUS	HG002complexvar	*	85.7883	79.5496	93.0889	62.2772	1307	336	1320	98	72	73.4694
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.6938	96.4613	92.9899	50.7135	3053	112	3051	230	72	31.3043
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	93.1299	89.8491	96.6594	59.1348	4346	491	4456	154	72	46.7532
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	92.3491	87.7265	97.4860	57.2867	4260	596	4343	112	72	64.2857
dgrover-gatk	INDEL	I16_PLUS	HG002compoundhet	*	94.7743	93.0938	96.5167	53.0120	1995	148	1995	72	72	100.0000
hfeng-pmm2	SNP	*	*	homalt	99.9900	99.9890	99.9910	18.1427	1180031	130	1180018	106	72	67.9245
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1747	97.0673	99.3076	46.3948	10757	325	10757	75	72	96.0000
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.3252	96.0422	83.4862	59.5922	364	15	364	72	72	100.0000
jlack-gatk	INDEL	I1_5	HG002complexvar	*	99.5214	99.3556	99.6877	57.0609	33148	215	33197	104	72	69.2308
hfeng-pmm2	SNP	ti	*	*	99.9484	99.9340	99.9629	17.4396	2084135	1376	2084077	774	72	9.3023
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	85.0321	87.0220	83.1312	60.9052	751	112	754	153	72	47.0588
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	71.8123	94.5170	57.9030	83.9608	362	21	370	269	72	26.7658
ciseli-custom	SNP	ti	map_l125_m1_e0	het	77.4977	72.0300	83.8636	79.8833	13157	5109	13154	2531	72	2.8447

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