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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1530 1531 1532 1533 1534 1535 1536 1537 1538 ... 1720 1721 » 76651-76700 / 86044 show all
asubramanian-gatk	INDEL	I1_5	*	hetalt	96.2314	93.2470	99.4133	63.4018	10439	756	10505	62	58	93.5484
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.5642	91.2162	64.4970	75.8226	135	13	109	60	59	98.3333
asubramanian-gatk	INDEL	I16_PLUS	HG002compoundhet	homalt	8.6957	100.0000	4.5455	78.0731	3	0	3	63	59	93.6508
anovak-vg	INDEL	D16_PLUS	HG002complexvar	homalt	75.3150	76.8166	73.8710	63.3570	222	67	229	81	59	72.8395
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	81.1540	77.3058	85.4054	60.1508	637	187	632	108	59	54.6296
asubramanian-gatk	INDEL	*	HG002complexvar	het	98.7623	98.2061	99.3248	58.2604	45383	829	45014	306	59	19.2810
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	63.0411	72.4638	55.7870	87.7238	200	76	241	191	59	30.8901
anovak-vg	SNP	*	map_l150_m2_e0	homalt	88.0238	79.0922	99.2294	72.9596	9253	2446	9143	71	59	83.0986
anovak-vg	SNP	*	map_l150_m2_e1	homalt	88.0784	79.1748	99.2382	72.9549	9364	2463	9249	71	59	83.0986
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	92.3833	99.2084	86.4368	60.3102	376	3	376	59	59	100.0000
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.1473	2370	0	2370	59	59	100.0000
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	79.8732	68.2411	96.2857	80.2619	3034	1412	3033	117	59	50.4274
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	78.1128	65.0730	97.6884	78.4680	3253	1746	3254	77	59	76.6234
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	78.1128	65.0730	97.6884	78.4680	3253	1746	3254	77	59	76.6234
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.3526	88.8889	96.0973	56.8254	1184	148	1699	69	59	85.5072
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1685	99.1166	97.2384	51.9217	11332	101	11373	323	59	18.2663
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	91.7238	98.6053	85.7401	86.4136	6787	96	6163	1025	59	5.7561
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.8586	98.2884	99.4354	55.5329	16883	294	16730	95	59	62.1053
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	82.0661	89.3056	75.9124	88.1111	643	77	624	198	59	29.7980
gduggal-bwavard	SNP	ti	map_l125_m0_e0	het	92.1685	97.6038	87.3066	84.9758	8065	198	8013	1165	59	5.0644
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jpowers-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.0567	97.5229	90.8285	81.7751	19094	485	19163	1935	59	3.0491
jpowers-varprowl	SNP	ti	map_l250_m2_e1	*	95.5153	95.0355	96.0000	91.5044	4824	252	4824	201	59	29.3532
ltrigg-rtg1	INDEL	D1_5	*	hetalt	96.8514	94.4363	99.3932	69.7439	9675	570	9828	60	59	98.3333
jli-custom	SNP	*	map_l100_m0_e0	*	99.1662	98.8612	99.4730	63.5990	32467	374	32467	172	59	34.3023
jli-custom	SNP	*	map_l150_m2_e0	*	99.1640	98.8698	99.4599	73.1036	31492	360	31489	171	59	34.5029
jli-custom	SNP	*	map_l150_m2_e1	*	99.1717	98.8823	99.4628	73.1735	31850	360	31847	172	59	34.3023
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.1188	90.7483	91.4923	58.4348	667	68	656	61	59	96.7213
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	22.2306	13.2826	68.1223	82.0392	157	1025	156	73	59	80.8219
jpowers-varprowl	INDEL	*	map_l100_m0_e0	het	92.1663	93.3399	91.0220	88.6047	953	68	953	94	59	62.7660
jli-custom	INDEL	D1_5	HG002complexvar	*	99.5191	99.2725	99.7668	57.5505	32477	238	32518	76	59	77.6316
jli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8267	99.9315	99.7221	75.0916	21884	15	21888	61	59	96.7213
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
jmaeng-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	95.6913	98.9362	92.6526	62.5292	744	8	744	59	59	100.0000
jmaeng-gatk	INDEL	I6_15	*	het	98.6849	98.5049	98.8656	60.6937	9883	150	9848	113	59	52.2124
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	96.9463	95.1598	98.8011	63.5083	6016	306	6016	73	59	80.8219
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	96.9463	95.1598	98.8011	63.5083	6016	306	6016	73	59	80.8219
ckim-isaac	INDEL	D16_PLUS	HG002complexvar	*	76.1289	68.2288	86.0979	58.5597	1121	522	1090	176	59	33.5227
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.1310	94.7620	99.6215	40.8094	15830	875	16056	61	59	96.7213
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7706	100.0000	97.5710	56.3208	2370	0	2370	59	59	100.0000
dgrover-gatk	SNP	*	map_l150_m1_e0	*	99.1521	99.1473	99.1569	77.1188	30348	261	30342	258	59	22.8682
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
eyeh-varpipe	INDEL	*	map_l100_m0_e0	*	95.8235	95.2655	96.3881	94.1040	1489	74	2295	86	59	68.6047
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	83.6814	77.2332	91.3043	82.9887	977	288	1029	98	59	60.2041
mlin-fermikit	INDEL	D1_5	map_l150_m2_e0	homalt	70.6131	69.0083	72.2944	81.5052	167	75	167	64	59	92.1875
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.2458	97.9315	96.5697	82.2940	19174	405	19284	685	59	8.6131
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.2458	97.9315	96.5697	82.2940	19174	405	19284	685	59	8.6131
ckim-gatk	SNP	*	map_l125_m2_e0	*	84.6410	74.5907	97.8215	85.1222	34851	11872	34845	776	59	7.6031

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