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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
76001-76050 / 86044 show all
dgrover-gatkSNP*map_l150_m2_e1het
98.9757
99.1897
98.7625
81.1801
201981652019225350
19.7628
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7392
94.5387
99.0446
39.1669
557432255985450
92.5926
egarrison-hhgaSNP*map_l100_m2_e0*
99.5430
99.2483
99.8395
64.7214
734085567340911850
42.3729
egarrison-hhgaSNP*map_l100_m2_e1*
99.5464
99.2547
99.8398
64.7282
741805577418111950
42.0168
ckim-isaacSNP**homalt
98.3805
96.8182
99.9940
14.4545
11426123755011426686950
72.4638
ckim-vqsrINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.5214
97.8947
89.5221
87.3282
651144875750
87.7193
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.3178
93.0147
93.6229
58.8750
10127610136950
72.4638
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7392
94.5387
99.0446
39.1669
557432255985450
92.5926
ckim-vqsrINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.6522
92.5170
92.7878
58.2513
680556695250
96.1538
ckim-isaacINDELD6_15HG002compoundhethetalt
90.9387
83.9774
99.1585
17.7185
6845130671886150
81.9672
anovak-vgSNPtvmap_l250_m0_e0het
72.5540
81.1189
65.6250
96.1522
46410846224250
20.6612
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7240
96.4410
99.0416
63.3898
609722560975950
84.7458
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7240
96.4410
99.0416
63.3898
609722560975950
84.7458
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.8842
99.8788
94.0639
71.6321
82418245250
96.1538
bgallagher-sentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.8842
99.8788
94.0639
71.6321
82418245250
96.1538
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
bgallagher-sentieonSNP*map_l125_m0_e0*
98.8636
99.1953
98.5342
75.8607
192291561922628650
17.4825
bgallagher-sentieonSNP*map_l150_m2_e0het
98.7961
99.2748
98.3220
79.7541
199871461998134150
14.6628
bgallagher-sentieonSNP*map_l150_m2_e1het
98.8048
99.2830
98.3312
79.8100
202171462021134350
14.5773
bgallagher-sentieonSNPtimap_l100_m1_e0*
99.4715
99.5452
99.3979
64.6493
477132184770628950
17.3010
bgallagher-sentieonSNPtimap_l100_m2_e0*
99.4612
99.5466
99.3760
66.3096
487392224873230650
16.3399
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
bgallagher-sentieonSNPtimap_sirenhet
99.4766
99.6377
99.3160
56.6817
621562266214742850
11.6822
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.3047
90.1065
86.5734
76.6949
592656199650
52.0833
anovak-vgINDELD6_15map_sirenhet
77.1497
77.5000
76.8025
78.9021
217632457450
67.5676
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1344
98.2308
98.0381
71.7207
34986334987050
71.4286
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
70.5882
92.9577
56.8966
51.0549
665665050
100.0000
asubramanian-gatkINDELI1_5HG002complexvar*
99.2344
98.6572
99.8183
57.3625
32915448329676050
83.3333
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.4646
97.0242
97.9090
63.2516
15654826695750
87.7193
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7783
97.2753
98.2865
69.9578
23926734996150
81.9672
ckim-dragenINDELI6_15HG002complexvarhomalt
97.8586
99.7529
96.0349
55.1086
1211312115050
100.0000
ckim-gatkSNPtiHG002complexvarhet
99.7549
99.5549
99.9557
17.5388
313365140131331513950
35.9712
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2564
99.6414
98.8744
60.9154
352921273548740450
12.3762
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
84.9390
96.8944
75.6098
24.9084
15651555050
100.0000
ciseli-customSNPtvmap_l150_m2_e0het
71.3414
65.0579
78.9685
85.0033
471825344716125650
3.9809
ckim-dragenINDEL*HG002complexvarhet
99.6184
99.4569
99.7805
57.4574
459612514545810050
50.0000
ciseli-customINDELI1_5segduphet
90.6052
93.4944
87.8893
95.0934
503355087050
71.4286
ciseli-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
40.0000
85.7143
26.0870
33.0097
183185151
100.0000
ciseli-customINDELD6_15map_l100_m2_e1homalt
58.9323
76.1194
48.0769
85.1216
5116505451
94.4444
cchapple-customSNP**homalt
99.9445
99.8940
99.9951
16.2464
1178910125111776365851
87.9310
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.5802
99.2727
94.0299
72.0565
81968195251
98.0769
ckim-dragenINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.5802
99.2727
94.0299
72.0565
81968195251
98.0769
ckim-dragenSNPti*homalt
99.9710
99.9493
99.9928
15.7227
8026314078027385851
87.9310
ckim-dragenSNPtimap_l150_m1_e0het
97.4739
98.7146
96.2639
80.0619
122111591221347451
10.7595
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1540
92.9308
99.6088
28.2869
12791973129855151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
ckim-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.2428
98.0451
88.8889
87.2266
652134886151
83.6066
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
92.5881
92.5170
92.6593
58.2176
680556695351
96.2264