PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75451-75500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.8028 | 97.6785 | 97.9275 | 46.3889 | 7279 | 173 | 7182 | 152 | 45 | 29.6053 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | het | 91.6040 | 98.1446 | 85.8808 | 81.9878 | 7088 | 134 | 7074 | 1163 | 45 | 3.8693 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | het | 91.8305 | 98.3805 | 86.0982 | 85.8449 | 7229 | 119 | 7209 | 1164 | 45 | 3.8660 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.2899 | 84.1808 | 82.4176 | 55.5375 | 149 | 28 | 225 | 48 | 45 | 93.7500 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 80.5715 | 75.2066 | 86.7606 | 55.0063 | 182 | 60 | 308 | 47 | 45 | 95.7447 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.1577 | 91.3256 | 99.3255 | 38.6854 | 2990 | 284 | 8246 | 56 | 45 | 80.3571 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5287 | 70.4992 | 91.2109 | 53.4545 | 1864 | 780 | 467 | 45 | 45 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | het | 98.2193 | 98.7871 | 97.6581 | 76.5519 | 10425 | 128 | 10425 | 250 | 45 | 18.0000 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 48.4848 | 84.1346 | 0 | 1 | 144 | 153 | 45 | 29.4118 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.2006 | 94.8980 | 70.9586 | 87.8472 | 1674 | 90 | 1251 | 512 | 45 | 8.7891 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0585 | 99.7289 | 92.6487 | 50.1527 | 11402 | 31 | 10889 | 864 | 45 | 5.2083 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 84.1712 | 93.6594 | 76.4286 | 83.9334 | 1034 | 70 | 856 | 264 | 45 | 17.0455 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2887 | 100.0000 | 61.6667 | 83.5391 | 169 | 0 | 74 | 46 | 45 | 97.8261 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1341 | 96.7259 | 99.5838 | 73.0521 | 15067 | 510 | 15075 | 63 | 45 | 71.4286 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0456 | 99.3353 | 98.7576 | 71.4856 | 3736 | 25 | 3736 | 47 | 45 | 95.7447 | |
| jmaeng-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.1392 | 99.9176 | 96.4229 | 55.6886 | 1213 | 1 | 1213 | 45 | 45 | 100.0000 | |
| jmaeng-gatk | SNP | * | map_l100_m0_e0 | het | 85.9916 | 77.4251 | 96.6894 | 86.7577 | 16418 | 4787 | 16414 | 562 | 45 | 8.0071 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8957 | 98.4694 | 99.3257 | 54.3646 | 19558 | 304 | 19592 | 133 | 45 | 33.8346 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | het | 74.3119 | 88.0435 | 64.2857 | 94.1066 | 81 | 11 | 81 | 45 | 45 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.8903 | 96.4792 | 99.3433 | 38.3411 | 9125 | 333 | 9076 | 60 | 45 | 75.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.0521 | 96.8708 | 99.2627 | 50.9309 | 6470 | 209 | 6462 | 48 | 45 | 93.7500 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1552 | 98.5347 | 99.7836 | 72.0617 | 32749 | 487 | 32742 | 71 | 45 | 63.3803 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.3676 | 90.9984 | 91.7399 | 68.5635 | 556 | 55 | 522 | 47 | 45 | 95.7447 | |
| hfeng-pmm3 | INDEL | D6_15 | * | homalt | 99.3845 | 99.5416 | 99.2279 | 50.7795 | 6297 | 29 | 6297 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | homalt | 51.0638 | 100.0000 | 34.2857 | 66.3462 | 24 | 0 | 24 | 46 | 45 | 97.8261 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0206 | 99.3362 | 98.7071 | 54.3318 | 3741 | 25 | 3741 | 49 | 45 | 91.8367 | |
| hfeng-pmm3 | INDEL | I16_PLUS | * | homalt | 98.1968 | 99.4234 | 97.0000 | 68.6397 | 1552 | 9 | 1552 | 48 | 45 | 93.7500 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | * | 95.0875 | 92.5805 | 97.7340 | 52.1790 | 1984 | 159 | 1984 | 46 | 45 | 97.8261 | |
| hfeng-pmm3 | SNP | * | * | homalt | 99.9916 | 99.9889 | 99.9942 | 17.9575 | 1180030 | 131 | 1180013 | 68 | 45 | 66.1765 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8865 | 96.0317 | 89.9408 | 90.7338 | 1694 | 70 | 1824 | 204 | 45 | 22.0588 | |
| qzeng-custom | SNP | ti | HG002compoundhet | het | 98.0838 | 97.7380 | 98.4320 | 42.6883 | 9290 | 215 | 11739 | 187 | 45 | 24.0642 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8278 | 98.3293 | 99.3313 | 69.2512 | 11359 | 193 | 11290 | 76 | 45 | 59.2105 | |
| qzeng-custom | SNP | ti | segdup | * | 98.7450 | 98.9558 | 98.5351 | 91.7233 | 19333 | 204 | 19237 | 286 | 45 | 15.7343 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| qzeng-custom | SNP | tv | map_l125_m2_e1 | homalt | 84.2063 | 73.2631 | 98.9926 | 69.1889 | 4450 | 1624 | 4422 | 45 | 45 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | * | 73.9185 | 63.3987 | 88.6239 | 97.9721 | 485 | 280 | 483 | 62 | 45 | 72.5806 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | het | 90.4295 | 87.7145 | 93.3180 | 67.0463 | 971 | 136 | 810 | 58 | 45 | 77.5862 | |
| mlin-fermikit | INDEL | I1_5 | * | hetalt | 79.4455 | 66.1635 | 99.3997 | 62.4768 | 7407 | 3788 | 7451 | 45 | 45 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.7875 | 97.1564 | 81.7460 | 71.8121 | 205 | 6 | 206 | 46 | 45 | 97.8261 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 74.3472 | 92.7273 | 62.0482 | 92.1103 | 102 | 8 | 103 | 63 | 45 | 71.4286 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | het | 88.4674 | 95.9350 | 82.0784 | 59.1925 | 1062 | 45 | 1319 | 288 | 45 | 15.6250 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.6041 | 74.3750 | 85.6240 | 66.7717 | 119 | 41 | 542 | 91 | 45 | 49.4505 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.8953 | 92.2197 | 83.9583 | 47.5410 | 403 | 34 | 403 | 77 | 45 | 58.4416 | |
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | hetalt | 98.0424 | 96.5838 | 99.5458 | 62.4013 | 9867 | 349 | 9863 | 45 | 45 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3394 | 98.7572 | 97.9251 | 69.6626 | 45134 | 568 | 45544 | 965 | 45 | 4.6632 | |