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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1500 1501 1502 1503 1504 1505 1506 1507 1508 ... 1720 1721 » 75151-75200 / 86044 show all
bgallagher-sentieon	INDEL	D1_5	*	hetalt	96.6974	93.9971	99.5574	61.8361	9630	615	9672	43	42	97.6744
bgallagher-sentieon	INDEL	D1_5	HG002complexvar	hetalt	94.8411	92.8994	96.8657	72.1182	1256	96	1298	42	42	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.4850	94.3803	98.6856	56.4231	3678	219	3679	49	42	85.7143
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	*	99.3257	99.4273	99.2243	71.0550	29167	168	29163	228	42	18.4211
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	*	99.3281	99.4316	99.2249	72.6504	30086	172	30082	235	42	17.8723
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	*	99.3333	99.4373	99.2295	72.6907	30397	172	30393	236	42	17.7966
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	74.5401	60.5690	96.8890	74.8497	6728	4380	6727	216	42	19.4444
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	35.3662	31.0680	41.0448	83.2080	64	142	55	79	42	53.1646
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	64.2663	78.7037	54.3046	76.0317	85	23	82	69	42	60.8696
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	95.0505	97.9987	92.2745	68.7494	3085	63	2783	233	42	18.0258
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	95.9795	96.8235	95.1501	49.1486	823	27	824	42	42	100.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	98.0823	99.0065	97.1751	54.0902	6677	67	6708	195	42	21.5385
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	72.9905	59.8984	93.4066	85.0088	3655	2447	3655	258	42	16.2791
gduggal-bwavard	SNP	*	map_l250_m1_e0	*	90.1392	97.5353	83.7857	91.6472	7044	178	6976	1350	42	3.1111
gduggal-bwavard	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.4259	97.9953	96.8630	51.4454	4595	94	4539	147	42	28.5714
ckim-vqsr	INDEL	I6_15	HG002complexvar	*	98.1251	97.1828	99.0859	57.0293	4657	135	4661	43	42	97.6744
eyeh-varpipe	INDEL	*	map_l150_m2_e1	*	96.5509	96.1084	96.9975	95.6629	1383	56	1906	59	42	71.1864
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	0.0000	0.0000	70.6250	95.1427	0	0	113	47	42	89.3617
eyeh-varpipe	INDEL	C1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.0000	70.6250	95.1427	0	0	113	47	42	89.3617
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	77.4499	66.9661	91.8256	57.9851	671	331	674	60	42	70.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.3538	99.2084	89.9522	60.9346	376	3	376	42	42	100.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	79.2028	81.7073	76.8473	78.8981	134	30	156	47	42	89.3617
egarrison-hhga	INDEL	D1_5	HG002complexvar	hetalt	79.1212	67.7515	95.0766	77.6746	916	436	869	45	42	93.3333
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	64.3918	47.8099	98.5834	40.4750	3853	4206	3410	49	42	85.7143
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	64.3918	47.8099	98.5834	40.4750	3853	4206	3410	49	42	85.7143
egarrison-hhga	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6237	97.0597	98.1943	69.6107	3433	104	3426	63	42	66.6667
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.4797	95.7302	99.2944	52.9989	6614	295	6614	47	42	89.3617
dgrover-gatk	SNP	ti	map_l125_m2_e0	*	99.3734	99.3258	99.4210	73.9134	30054	204	30050	175	42	24.0000
dgrover-gatk	SNP	ti	map_l125_m2_e1	*	99.3781	99.3327	99.4236	73.9461	30365	204	30361	176	42	23.8636
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7060	96.2006	99.2594	58.4607	8077	319	8041	60	42	70.0000
hfeng-pmm1	INDEL	D6_15	*	homalt	99.4474	99.5732	99.3220	50.6075	6299	27	6299	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	HG002compoundhet	homalt	53.3333	100.0000	36.3636	67.8049	24	0	24	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.9167	99.3224	98.5143	47.0103	2785	19	2785	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.0239	99.3681	98.6821	49.3000	3145	20	3145	42	42	100.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1261	99.3893	98.8642	54.0422	3743	23	3743	43	42	97.6744
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.2974	99.4333	99.1620	40.9075	5088	29	5088	43	42	97.6744
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.3494	99.4543	99.2447	49.9340	5650	31	5650	43	42	97.6744
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.1699	81.7568	69.5652	72.8346	121	27	96	42	42	100.0000
jlack-gatk	SNP	ti	map_l250_m2_e1	het	92.2399	98.3631	86.8344	94.0808	3245	54	3245	492	42	8.5366
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.7497	95.9658	99.6012	27.0945	10657	448	10739	43	42	97.6744
hfeng-pmm2	SNP	tv	*	*	99.9268	99.9066	99.9471	21.6564	968784	906	968705	513	42	8.1871
hfeng-pmm3	INDEL	*	HG002complexvar	het	98.8973	97.9724	99.8399	56.4422	45275	937	44901	72	42	58.3333
hfeng-pmm3	INDEL	D1_5	HG002compoundhet	het	87.8989	80.4977	96.7989	73.8775	1391	337	1391	46	42	91.3043
hfeng-pmm3	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8197	99.8356	99.8037	72.1124	21863	36	21863	43	42	97.6744
jlack-gatk	INDEL	D1_5	HG002complexvar	hetalt	93.7719	91.1243	96.5779	72.4607	1232	120	1270	45	42	93.3333
jlack-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	95.8359	92.4591	99.4688	63.5748	8595	701	8613	46	42	91.3043
hfeng-pmm1	SNP	ti	map_siren	*	99.7016	99.5376	99.8660	52.2018	99891	464	99878	134	42	31.3433
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	91.4127	92.9323	89.9420	85.4816	618	47	465	52	42	80.7692
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.9873	91.5781	96.5267	61.0569	1207	111	1195	43	42	97.6744

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