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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1496 1497 1498 1499 1500 1501 1502 1503 1504 ... 1720 1721 » 74951-75000 / 86044 show all
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	87.0859	79.3103	96.5517	52.0850	483	126	1176	42	40	95.2381
gduggal-bwafb	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	88.3609	86.1027	90.7407	70.8221	570	92	686	70	40	57.1429
eyeh-varpipe	INDEL	D6_15	map_siren	homalt	78.3526	87.6923	70.8108	81.7374	114	16	131	54	40	74.0741
jlack-gatk	INDEL	I1_5	HG002complexvar	homalt	99.7623	99.8364	99.6883	53.0964	13426	22	13432	42	40	95.2381
jlack-gatk	SNP	ti	map_l250_m2_e0	het	92.2213	98.3712	86.7950	94.0302	3201	53	3201	487	40	8.2136
jlack-gatk	SNP	tv	map_l150_m0_e0	*	92.3966	97.9875	87.4091	87.6580	4090	84	4089	589	40	6.7912
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.5249	95.8559	99.2531	52.1381	7078	306	7043	53	40	75.4717
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.2750	99.3899	99.1604	41.1634	4724	29	4724	40	40	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	94.1563	97.8654	90.7180	83.3187	596	13	518	53	40	75.4717
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
jlack-gatk	INDEL	D6_15	HG002complexvar	het	98.1096	98.1090	98.1101	59.2917	3061	59	3011	58	40	68.9655
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.5934	95.8965	99.3515	52.0127	7081	303	7047	46	40	86.9565
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7838	96.2244	99.3945	58.5102	8079	317	8044	49	40	81.6327
hfeng-pmm3	SNP	*	HG002complexvar	*	99.8875	99.7894	99.9859	18.8968	752792	1589	752645	106	40	37.7358
hfeng-pmm3	SNP	*	map_siren	*	99.7673	99.6957	99.8390	54.1028	145783	445	145760	235	40	17.0213
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.9131	95.6458	96.1820	79.8889	1296	59	1184	47	40	85.1064
rpoplin-dv42	INDEL	I6_15	*	hetalt	94.8036	90.5625	99.4614	37.3252	7744	807	7756	42	40	95.2381
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	89.2479	85.0979	93.8235	76.4116	5739	1005	5742	378	40	10.5820
gduggal-snapvard	INDEL	*	map_siren	homalt	89.9289	83.0132	98.1015	71.6674	2204	451	2377	46	40	86.9565
gduggal-snapvard	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	0.0000	0.0000	36.3924	88.4798	0	0	115	201	40	19.9005
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	het	0.0000	0.0000	46.0317	89.0815	0	0	87	102	40	39.2157
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	40.1132	30.9859	56.8627	26.6187	44	98	58	44	40	90.9091
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	48.0929	41.6667	56.8627	26.6187	10	14	58	44	40	90.9091
gduggal-snapvard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	0.0000	0.0000	27.3743	59.8655	0	168	49	130	40	30.7692
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	32.7668	34.5725	31.1404	85.7143	93	176	71	157	40	25.4777
gduggal-snapvard	INDEL	I1_5	map_l150_m1_e0	*	89.6858	94.8617	85.0455	90.4043	480	26	654	115	40	34.7826
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	60.9231	51.0140	75.6098	42.2535	327	314	124	40	40	100.0000
ghariani-varprowl	SNP	tv	map_l100_m2_e1	homalt	99.1004	98.8820	99.3197	66.7481	9198	104	9198	63	40	63.4921
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6120	99.6463	99.5777	54.2814	10142	36	10139	43	40	93.0233
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	83.1109	76.3884	91.1308	38.7228	4154	1284	411	40	40	100.0000
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.7136	98.0663	84.3866	84.5224	355	7	227	42	40	95.2381
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	26.5613	34.4262	21.6216	60.9155	21	40	24	87	40	45.9770
astatham-gatk	SNP	*	map_l150_m2_e0	*	91.4701	84.5033	99.6888	80.0769	26916	4936	26910	84	40	47.6190
astatham-gatk	SNP	*	map_l150_m2_e1	*	91.4615	84.4862	99.6922	80.1245	27213	4997	27207	84	40	47.6190
bgallagher-sentieon	SNP	*	map_l125_m0_e0	het	98.5131	99.1551	97.8793	78.7667	12557	107	12554	272	40	14.7059
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.8231	97.4321	98.2172	67.5349	1328	35	2424	44	40	90.9091
asubramanian-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.6118	90.0651	97.4492	65.8974	1659	183	1872	49	41	83.6735
anovak-vg	SNP	*	func_cds	homalt	99.1150	98.8967	99.3342	20.4124	6902	77	6863	46	41	89.1304
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	96.9633	96.8927	97.0341	36.0748	2401	77	2421	74	41	55.4054
anovak-vg	SNP	ti	map_l100_m0_e0	homalt	88.2155	79.3671	99.2843	61.2798	6170	1604	6104	44	41	93.1818
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.7996	97.7237	97.8756	64.8324	1889	44	1889	41	41	100.0000
bgallagher-sentieon	SNP	ti	*	homalt	99.9867	99.9791	99.9944	15.8584	802870	168	802861	45	41	91.1111
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	86.4894	84.3750	88.7125	60.9235	486	90	503	64	41	64.0625
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.9721	88.4125	91.5877	56.8507	763	100	773	71	41	57.7465
astatham-gatk	SNP	*	map_siren	het	89.6918	81.4059	99.8557	63.3177	74072	16919	74058	107	41	38.3178
astatham-gatk	SNP	ti	*	homalt	99.9764	99.9582	99.9946	15.8604	802702	336	802693	43	41	95.3488
astatham-gatk	SNP	ti	HG002complexvar	*	99.2181	98.4614	99.9866	17.7102	500613	7823	500548	67	41	61.1940
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.2904	97.2376	84.2697	84.6816	352	10	225	42	41	97.6190
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	75.9608	97.6331	62.1622	84.2553	165	4	69	42	41	97.6190
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	51.7990	43.9490	63.0631	54.1322	69	88	70	41	41	100.0000

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