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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
74851-74900 / 86044 show all
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.1461
96.8750
97.4186
69.7659
17365617364639
84.7826
anovak-vgINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
46.1295
40.0000
54.4776
81.4147
6293736139
63.9344
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.9502
97.0480
96.8526
49.3747
23677224317939
49.3671
astatham-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
97.6175
97.2128
98.0256
69.1545
25817425325139
76.4706
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3679
99.4491
99.2868
52.6423
66793766824839
81.2500
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1408
94.9941
99.3867
29.3238
647134164824039
97.5000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.4252
92.3274
98.7380
54.1740
359829935994639
84.7826
dgrover-gatkINDELI6_15HG002complexvar*
98.6793
98.2053
99.1579
57.8639
47068647104039
97.5000
dgrover-gatkSNPti*homalt
99.9851
99.9756
99.9946
15.9219
8028421968028334339
90.6977
dgrover-gatkSNPtimap_l100_m2_e0het
99.4042
99.4416
99.3668
70.9135
304511713044419439
20.1031
dgrover-gatkSNPtimap_l100_m2_e1het
99.4091
99.4477
99.3705
70.9092
307891713078219539
20.0000
egarrison-hhgaINDEL*map_l100_m1_e0*
97.4160
97.1835
97.6497
97.4833
348510134908439
46.4286
egarrison-hhgaINDEL*map_l100_m2_e0*
97.4507
97.2380
97.6643
97.6120
359110235968639
45.3488
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
93.4420
91.1431
95.8599
59.1279
120411712045239
75.0000
egarrison-hhgaSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5935
99.4554
99.7320
55.2895
20089110200975439
72.2222
egarrison-hhgaSNPtvHG002compoundhet*
98.7023
98.0164
99.3979
47.2112
874617787495339
73.5849
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
62.3549
57.1429
68.6131
99.8675
129944339
90.6977
eyeh-varpipeINDELC1_5HG002compoundhethetalt
95.5961
100.0000
91.5638
80.0247
104454139
95.1220
ckim-vqsrSNPtv*het
99.3645
98.9162
99.8170
31.1430
5852836413585211107339
3.6347
dgrover-gatkINDELD1_5HG002compoundhethetalt
97.3579
95.2232
99.5905
58.8743
972848897294039
97.5000
dgrover-gatkINDELD6_15*hetalt
97.1534
94.9352
99.4777
33.7944
776041478094139
95.1220
ckim-vqsrINDELD1_5HG002compoundhethetalt
96.5656
93.7157
99.5943
58.2787
957464295743939
100.0000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.7729
96.8794
96.6667
75.3175
13664413344639
84.7826
ckim-vqsrINDELD6_15*hetalt
96.8555
94.3479
99.5000
32.9551
771246277613939
100.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.5725
99.8788
95.3704
71.6070
82418244039
97.5000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.5725
99.8788
95.3704
71.6070
82418244039
97.5000
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
88.5277
86.8852
90.2335
62.7373
424644254639
84.7826
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
76.5171
62.3875
98.9208
32.6004
4296259040334440
90.9091
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
97.3948
97.3583
97.4313
62.8424
3796103379310040
40.0000
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
93.5628
88.9960
98.6237
42.7471
313838831534440
90.9091
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
93.5628
88.9960
98.6237
42.7471
313838831534440
90.9091
egarrison-hhgaSNP*segdup*
99.6030
99.6793
99.5269
89.4388
27977902797713340
30.0752
dgrover-gatkSNP*map_l125_m0_e0het
98.7051
99.0287
98.3836
80.4812
125411231253820640
19.4175
dgrover-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
97.4823
96.9868
97.9829
69.3497
25758025265240
76.9231
dgrover-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.5608
96.7376
96.3847
75.3388
13644613335040
80.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8714
98.8734
96.8895
83.9166
658275666621440
18.6916
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
93.6576
91.5216
95.8958
60.2572
120911212155240
76.9231
ndellapenna-hhgaSNP*map_l150_m1_e0*
99.0061
98.2783
99.7447
72.1099
30082527300827740
51.9481
ndellapenna-hhgaSNP*map_l150_m2_e0*
99.0356
98.3329
99.7484
73.8523
31321531313217940
50.6329
ndellapenna-hhgaSNP*map_l150_m2_e1*
99.0401
98.3421
99.7481
73.9108
31676534316768040
50.0000
ndellapenna-hhgaSNPtimap_l100_m2_e0*
99.3576
98.8807
99.8392
63.3838
48413548484157840
51.2821
ndellapenna-hhgaSNPtimap_l100_m2_e1*
99.3624
98.8906
99.8388
63.3822
48936549489387940
50.6329
ndellapenna-hhgaINDEL*map_l100_m2_e1*
97.2360
96.8584
97.6165
97.7206
363811836458940
44.9438
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
93.5800
96.8468
90.5263
70.9302
430144304540
88.8889
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
90.5095
98.0519
84.0445
60.8569
45394538640
46.5116
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
80.1325
95.2756
69.1429
50.8427
12161215440
74.0741
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
76.6168
62.5327
98.8894
32.4892
4306258040074540
88.8889
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
98.2925
97.1972
99.4127
32.2154
669319367714040
100.0000