PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74601-74650 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 56.8695 | 48.3146 | 69.1057 | 74.5868 | 86 | 92 | 85 | 38 | 38 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 66.1090 | 79.0323 | 56.8182 | 83.1418 | 49 | 13 | 50 | 38 | 38 | 100.0000 | |
| jpowers-varprowl | SNP | ti | segdup | * | 98.3696 | 99.2783 | 97.4774 | 91.2225 | 19396 | 141 | 19398 | 502 | 38 | 7.5697 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8332 | 90.8911 | 96.9721 | 73.4710 | 3672 | 368 | 3651 | 114 | 38 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3085 | 95.2111 | 99.5005 | 59.4918 | 13917 | 700 | 13943 | 70 | 38 | 54.2857 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1131 | 98.8610 | 99.3665 | 64.2948 | 8940 | 103 | 8940 | 57 | 38 | 66.6667 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.8789 | 99.0654 | 69.7740 | 90.1347 | 1484 | 14 | 1482 | 642 | 38 | 5.9190 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 47.8156 | 40.9091 | 57.5278 | 84.8321 | 882 | 1274 | 982 | 725 | 38 | 5.2414 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | * | 79.9637 | 72.2811 | 89.4737 | 91.2096 | 2592 | 994 | 2822 | 332 | 38 | 11.4458 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.7665 | 14.5247 | 65.3430 | 41.4376 | 191 | 1124 | 181 | 96 | 38 | 39.5833 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 23.7492 | 32.3709 | 18.7542 | 83.9944 | 796 | 1663 | 840 | 3639 | 38 | 1.0442 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 51.3343 | 37.8608 | 79.6954 | 89.2663 | 446 | 732 | 471 | 120 | 38 | 31.6667 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 55.0640 | 44.6809 | 71.7340 | 85.7770 | 252 | 312 | 302 | 119 | 38 | 31.9328 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 70.5199 | 59.6244 | 86.2876 | 93.0181 | 508 | 344 | 516 | 82 | 38 | 46.3415 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5334 | 97.5261 | 86.2345 | 56.9835 | 4573 | 116 | 4523 | 722 | 38 | 5.2632 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | * | 63.0655 | 62.9371 | 63.1944 | 94.7137 | 90 | 53 | 91 | 53 | 38 | 71.6981 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | het | 72.0679 | 93.5897 | 58.5938 | 93.8343 | 73 | 5 | 75 | 53 | 38 | 71.6981 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.5148 | 79.8587 | 63.1285 | 77.4132 | 226 | 57 | 226 | 132 | 38 | 28.7879 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | het | 81.8658 | 97.6812 | 70.4581 | 90.5282 | 337 | 8 | 446 | 187 | 38 | 20.3209 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 76.3488 | 85.1613 | 69.1892 | 86.1111 | 132 | 23 | 128 | 57 | 38 | 66.6667 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | * | 67.8956 | 65.9686 | 69.9387 | 92.8194 | 126 | 65 | 114 | 49 | 38 | 77.5510 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | het | 87.4266 | 98.6622 | 78.4884 | 92.1449 | 295 | 4 | 405 | 111 | 38 | 34.2342 | |
| gduggal-snapvard | SNP | tv | HG002compoundhet | homalt | 90.8698 | 84.7107 | 97.9946 | 41.8088 | 2870 | 518 | 2541 | 52 | 38 | 73.0769 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.5878 | 82.9794 | 99.7323 | 63.7829 | 16761 | 3438 | 16763 | 45 | 38 | 84.4444 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.7527 | 75.1764 | 99.7922 | 61.3457 | 23125 | 7636 | 23046 | 48 | 38 | 79.1667 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.0929 | 83.6170 | 95.3363 | 63.5012 | 1179 | 231 | 1942 | 95 | 38 | 40.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.0110 | 96.4467 | 80.9322 | 61.2479 | 190 | 7 | 191 | 45 | 38 | 84.4444 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.9010 | 92.8196 | 92.9825 | 55.8140 | 530 | 41 | 530 | 40 | 38 | 95.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 83.0948 | 80.0643 | 86.3636 | 58.1871 | 249 | 62 | 247 | 39 | 38 | 97.4359 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | * | 97.6861 | 97.3276 | 98.0471 | 89.3479 | 7029 | 193 | 7029 | 140 | 38 | 27.1429 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | * | 97.8174 | 97.4762 | 98.1609 | 89.8565 | 7686 | 199 | 7686 | 144 | 38 | 26.3889 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | * | 94.0042 | 93.7634 | 94.2462 | 86.7599 | 1308 | 87 | 1294 | 79 | 38 | 48.1013 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | * | 93.4753 | 91.3274 | 95.7267 | 83.9230 | 3275 | 311 | 3293 | 147 | 38 | 25.8503 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.3446 | 96.7651 | 84.7231 | 88.8814 | 1376 | 46 | 1392 | 251 | 38 | 15.1394 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | * | 98.4300 | 98.7008 | 98.1606 | 72.2063 | 10940 | 144 | 10940 | 205 | 38 | 18.5366 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | * | 98.4669 | 98.5887 | 98.3454 | 76.8340 | 10758 | 154 | 10758 | 181 | 38 | 20.9945 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | * | 98.5152 | 98.6437 | 98.3871 | 78.4497 | 11346 | 156 | 11346 | 186 | 38 | 20.4301 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | * | 98.7938 | 99.6867 | 97.9168 | 73.3897 | 45185 | 142 | 43853 | 933 | 38 | 4.0729 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | * | 98.7944 | 99.6939 | 97.9109 | 74.9243 | 46580 | 143 | 45227 | 965 | 38 | 3.9378 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | * | 98.7976 | 99.6949 | 97.9163 | 74.9861 | 47058 | 144 | 45676 | 972 | 38 | 3.9095 | |
| eyeh-varpipe | SNP | tv | HG002complexvar | homalt | 99.9220 | 99.9001 | 99.9440 | 20.4163 | 95016 | 95 | 89180 | 50 | 38 | 76.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 62.7586 | 94.9565 | 0 | 0 | 91 | 54 | 38 | 70.3704 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |