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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
74551-74600 / 86044 show all
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.6093
91.9316
99.5935
30.0616
10209896102904237
88.0952
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
67.8262
71.8519
64.2276
75.9766
9738794437
84.0909
jlack-gatkINDELD6_15*hetalt
94.6900
90.3964
99.4119
33.6937
738978574384437
84.0909
jlack-gatkINDELD6_15HG002complexvarhetalt
92.4487
89.3386
95.7831
48.0438
9051089544237
88.0952
hfeng-pmm2INDELI6_15HG002complexvar*
98.1553
97.1411
99.1910
57.4123
465513746593837
97.3684
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3558
97.1558
99.5859
47.3310
10111296101014237
88.0952
hfeng-pmm1SNP*map_l100_m0_e0*
99.3989
99.1931
99.6055
67.8013
325762653257212937
28.6822
hfeng-pmm1SNP*map_l150_m1_e0*
99.3336
99.1016
99.5666
73.6726
303342753032813237
28.0303
hfeng-pmm1SNP*map_l150_m2_e0*
99.3518
99.1272
99.5773
75.1179
315742783156813437
27.6119
hfeng-pmm1SNP*map_l150_m2_e1*
99.3543
99.1307
99.5789
75.1677
319302803192413537
27.4074
hfeng-pmm1SNP*map_sirenhet
99.5907
99.3571
99.8255
53.5727
904065859039215838
24.0506
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.5103
99.5446
99.4760
35.3827
72143372143838
100.0000
hfeng-pmm2INDELI1_5HG002complexvar*
99.5522
99.2597
99.8464
56.6743
33116247331595138
74.5098
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4946
98.2087
98.7822
76.6731
630511562467738
49.3506
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.4946
98.2087
98.7822
76.6731
630511562467738
49.3506
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.6208
90.1948
99.5035
32.1162
838091184174238
90.4762
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.6208
90.1948
99.5035
32.1162
838091184174238
90.4762
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1733
95.1598
99.2739
61.8292
601630660164438
86.3636
hfeng-pmm2SNPtiHG002complexvar*
99.8914
99.8002
99.9829
17.3851
50742010165073618738
43.6782
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
90.5350
91.9220
89.1892
48.1793
330293304038
95.0000
hfeng-pmm3INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
91.7813
89.3878
94.3066
53.8098
657786463938
97.4359
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.2991
91.8816
96.8472
60.7800
121110711983938
97.4359
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
91.7813
89.3878
94.3066
53.8721
657786463938
97.4359
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2885
97.1365
99.4681
47.3280
10109298100985438
70.3704
ndellapenna-hhgaINDEL*map_l100_m1_e0*
97.2875
96.9325
97.6451
97.5899
347611034838438
45.2381
ndellapenna-hhgaINDEL*map_l100_m2_e0*
97.3112
96.9402
97.6852
97.7103
358011335878538
44.7059
ndellapenna-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
85.7237
78.9364
93.7881
67.9922
7572027705138
74.5098
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.9633
96.4517
99.5230
36.1107
788329079293838
100.0000
ltrigg-rtg2INDELI1_5*homalt
99.7495
99.5797
99.9200
48.8836
60173254599554838
79.1667
ltrigg-rtg2SNP*map_siren*
99.4570
99.1479
99.7681
47.8411
144981124614497533738
11.2760
qzeng-customSNPtimap_l150_m2_e1homalt
80.1365
67.1910
99.2610
72.9055
5169252451043838
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
60.2317
54.9296
66.6667
46.3303
7864783938
97.4359
mlin-fermikitINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
73.7321
76.6917
70.9924
82.6490
10231933838
100.0000
mlin-fermikitINDELI1_5HG002compoundhethetalt
79.4743
66.1627
99.4916
57.4825
7395378274373838
100.0000
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.0073
98.6439
99.3734
43.8166
61838561853938
97.4359
mlin-fermikitSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.8267
99.3639
98.2952
44.3446
21871421913838
100.0000
ndellapenna-hhgaINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1729
95.2004
99.2289
61.5550
565328556624438
86.3636
ndellapenna-hhgaINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
88.1449
83.3732
93.4959
66.1468
6971396904838
79.1667
ndellapenna-hhgaSNPtimap_l100_m1_e0*
99.3542
98.8671
99.8462
61.3943
47388543473907338
52.0548
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.0103
94.5783
99.5706
64.1494
879250488113838
100.0000
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
88.2022
97.5155
80.5128
34.1216
15741573838
100.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.0900
94.8591
99.4283
33.0075
653235466093838
100.0000
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1659
93.1102
99.4290
31.4906
662249066173838
100.0000
jli-customSNPtimap_l100_m1_e0het
99.3190
99.1250
99.5138
62.5391
296802622967814538
26.2069
jli-customSNPtimap_l100_m2_e0het
99.3179
99.1411
99.4953
64.3096
303592633035715438
24.6753
jli-customSNPtimap_l100_m2_e1het
99.3237
99.1505
99.4976
64.3340
306972633069515538
24.5161
ltrigg-rtg1SNP*map_l100_m2_e0*
99.3059
98.8413
99.7748
59.2762
731078577310416538
23.0303
ltrigg-rtg1SNP*map_l100_m2_e1*
99.3071
98.8520
99.7664
59.3097
738798587387617338
21.9653
ltrigg-rtg1SNPtimap_siren*
99.5060
99.2556
99.7576
49.1435
996077479960124238
15.7025