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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1486 1487 1488 1489 1490 1491 1492 1493 1494 ... 1720 1721 » 74451-74500 / 86044 show all
gduggal-snapvard	INDEL	D6_15	map_l125_m2_e1	*	70.7555	70.3125	71.2042	85.5303	90	38	136	55	37	67.2727
gduggal-snapvard	INDEL	D6_15	segdup	het	71.7253	78.2609	66.1972	93.2445	72	20	94	48	37	77.0833
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	54.2716	87.3611	39.3624	86.5975	629	91	605	932	37	3.9700
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	87.8646	98.7097	79.1667	84.0000	153	2	152	40	37	92.5000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	67.2129	61.2360	74.4828	76.8000	109	69	108	37	37	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	83.2117	93.4426	75.0000	70.8955	114	8	117	39	37	94.8718
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	74.0111	93.5484	61.2245	84.4444	58	4	60	38	37	97.3684
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	84.1219	73.6301	98.1006	47.7187	645	231	1911	37	37	100.0000
gduggal-bwafb	INDEL	I1_5	HG002complexvar	hetalt	89.3217	83.8355	95.5763	80.3162	1447	279	821	38	37	97.3684
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	95.7165	94.9376	96.5082	74.6707	1294	69	1299	47	37	78.7234
gduggal-bwafb	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.1862	98.9111	99.4628	53.1375	9992	110	9998	54	37	68.5185
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	81.4625	93.8889	71.9409	88.0905	676	44	682	266	37	13.9098
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	96.3424	97.9964	94.7434	73.1789	538	11	757	42	37	88.0952
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	52.8467	36.1380	98.2938	38.9792	1456	2573	2362	41	37	90.2439
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	92.5121	98.4899	87.2184	86.1606	4174	64	3910	573	37	6.4572
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	85.2150	75.8321	97.2477	53.3761	1481	472	1484	42	37	88.0952
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.8994	96.0896	99.7786	37.7218	17545	714	17577	39	37	94.8718
jli-custom	INDEL	D16_PLUS	*	het	97.9648	97.7208	98.2100	73.1193	3087	72	2853	52	37	71.1538
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	96.6502	96.4816	96.8193	81.9352	1755	64	1522	50	37	74.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	96.6502	96.4816	96.8193	81.9352	1755	64	1522	50	37	74.0000
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	87.1637	81.3486	93.8742	45.8781	567	130	567	37	37	100.0000
jli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4256	99.8900	98.9654	59.3515	3634	4	3635	38	37	97.3684
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	85.8472	76.6302	97.5845	55.5436	1610	491	1616	40	37	92.5000
jli-custom	SNP	*	HG002complexvar	homalt	99.9614	99.9404	99.9823	19.9145	288402	172	288385	51	37	72.5490
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	96.4888	93.5852	99.5783	30.8129	8695	596	8738	37	37	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	96.4888	93.5852	99.5783	30.8129	8695	596	8738	37	37	100.0000
jmaeng-gatk	INDEL	D6_15	*	hetalt	96.4840	93.6261	99.5219	32.9957	7653	521	7702	37	37	100.0000
jmaeng-gatk	INDEL	D6_15	HG002complexvar	hetalt	93.2190	90.3258	96.3037	47.2880	915	98	964	37	37	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.2878	93.9576	98.7365	52.3236	3281	211	3282	42	37	88.0952
jmaeng-gatk	SNP	ti	map_l100_m0_e0	*	83.3904	72.5047	98.1224	83.1489	15785	5986	15782	302	37	12.2517
raldana-dualsentieon	INDEL	D6_15	HG002complexvar	*	96.9018	94.6813	99.2289	57.2443	5020	282	5019	39	37	94.8718
raldana-dualsentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3948	99.8304	98.9630	72.1359	3531	6	3531	37	37	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6271	99.4292	99.8258	72.6049	21774	125	21771	38	37	97.3684
rpoplin-dv42	SNP	*	map_l125_m1_e0	homalt	99.4988	99.2251	99.7740	66.6415	16774	131	16774	38	37	97.3684
rpoplin-dv42	SNP	ti	map_l250_m2_e0	*	98.5577	98.2428	98.8746	88.2672	4920	88	4920	56	37	66.0714
rpoplin-dv42	SNP	tv	HG002complexvar	homalt	99.9385	99.9201	99.9569	22.8530	95035	76	95011	41	37	90.2439
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.7592	96.2430	97.2808	87.7639	2075	81	2075	58	37	63.7931
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.8158	98.6325	98.9998	83.5908	5049	70	5048	51	37	72.5490
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0139	98.4069	99.6285	44.6543	10192	165	10191	38	37	97.3684
rpoplin-dv42	INDEL	*	map_siren	het	98.2013	98.0257	98.3774	81.3714	4419	89	4426	73	37	50.6849
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.6510	98.5407	96.7772	70.9827	28293	419	28618	953	37	3.8825
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.6510	98.5407	96.7772	70.9827	28293	419	28618	953	37	3.8825
qzeng-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.2222	98.4038	98.0413	45.0797	1048	17	2703	54	37	68.5185
mlin-fermikit	INDEL	*	map_l150_m0_e0	homalt	61.1296	56.0976	67.1533	85.8617	92	72	92	45	37	82.2222
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	86.8106	91.8782	82.2727	58.6466	181	16	181	39	37	94.8718
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.9145	97.8347	97.9944	55.0665	4202	93	4202	86	37	43.0233
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	95.7480	95.8991	95.5975	81.7695	912	39	912	42	37	88.0952
qzeng-custom	SNP	ti	map_l150_m2_e0	homalt	79.9782	66.9643	99.2706	72.9194	5100	2516	5036	37	37	100.0000
ndellapenna-hhga	INDEL	*	segdup	*	97.8664	97.7308	98.0024	98.7178	2498	58	2502	51	37	72.5490
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	74.1810	59.3050	99.0185	33.0396	4847	3326	4439	44	37	84.0909

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