PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74301-74350 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | homalt | 99.6664 | 99.5412 | 99.7919 | 62.9736 | 18225 | 84 | 18226 | 38 | 36 | 94.7368 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | homalt | 99.6670 | 99.5404 | 99.7940 | 62.9692 | 18409 | 85 | 18410 | 38 | 36 | 94.7368 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | * | 98.4440 | 98.1000 | 98.7904 | 87.6879 | 4492 | 87 | 4492 | 55 | 36 | 65.4545 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.2891 | 92.0962 | 98.7113 | 50.7555 | 3216 | 276 | 3217 | 42 | 36 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | map_siren | het | 85.2572 | 76.0650 | 96.9765 | 74.1833 | 1732 | 545 | 1732 | 54 | 36 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 53.6585 | 91.6667 | 37.9310 | 51.2605 | 22 | 2 | 22 | 36 | 36 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | * | 62.6026 | 49.1713 | 86.1290 | 76.1722 | 267 | 276 | 267 | 43 | 36 | 83.7209 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | homalt | 67.7419 | 60.5769 | 76.8293 | 73.2463 | 126 | 82 | 126 | 38 | 36 | 94.7368 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | het | 82.5666 | 72.2784 | 96.2698 | 75.1037 | 1215 | 466 | 1213 | 47 | 36 | 76.5957 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4672 | 99.8135 | 97.1567 | 54.5004 | 1606 | 3 | 1606 | 47 | 36 | 76.5957 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 90.1766 | 83.9608 | 97.3863 | 87.9176 | 1628 | 311 | 1863 | 50 | 36 | 72.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7953 | 98.1565 | 99.4425 | 52.2443 | 2609 | 49 | 25329 | 142 | 36 | 25.3521 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.4043 | 94.3966 | 92.4327 | 50.2787 | 438 | 26 | 1649 | 135 | 36 | 26.6667 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.1461 | 96.4333 | 91.9648 | 90.4466 | 1460 | 54 | 1568 | 137 | 36 | 26.2774 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | homalt | 81.6311 | 69.2951 | 99.3106 | 61.6670 | 5387 | 2387 | 5330 | 37 | 36 | 97.2973 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 64.4666 | 47.9448 | 98.3624 | 43.7187 | 3266 | 3546 | 2763 | 46 | 36 | 78.2609 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.1666 | 95.2420 | 97.1093 | 71.1366 | 2342 | 117 | 2318 | 69 | 36 | 52.1739 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4344 | 96.9479 | 97.9258 | 61.8911 | 3780 | 119 | 3777 | 80 | 36 | 45.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | homalt | 96.3193 | 96.9522 | 95.6946 | 54.2209 | 1177 | 37 | 1178 | 53 | 36 | 67.9245 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.2022 | 93.2476 | 87.3494 | 68.7382 | 290 | 21 | 290 | 42 | 36 | 85.7143 | |
| ndellapenna-hhga | SNP | * | HG002compoundhet | het | 98.0271 | 96.5510 | 99.5491 | 42.9549 | 13689 | 489 | 13687 | 62 | 36 | 58.0645 | |
| ndellapenna-hhga | SNP | * | map_l125_m1_e0 | het | 98.8381 | 97.9748 | 99.7168 | 68.7996 | 27817 | 575 | 27817 | 79 | 36 | 45.5696 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e0 | het | 98.8614 | 98.0285 | 99.7086 | 70.3185 | 28740 | 578 | 28740 | 84 | 36 | 42.8571 | |
| ndellapenna-hhga | SNP | * | map_l125_m2_e1 | het | 98.8584 | 98.0229 | 99.7083 | 70.3755 | 29054 | 586 | 29054 | 85 | 36 | 42.3529 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5764 | 98.1511 | 99.0054 | 69.1058 | 19217 | 362 | 19211 | 193 | 36 | 18.6528 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.2318 | 91.4352 | 95.1004 | 84.7221 | 1185 | 111 | 1184 | 61 | 36 | 59.0164 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5764 | 98.1511 | 99.0054 | 69.1058 | 19217 | 362 | 19211 | 193 | 36 | 18.6528 | |
| qzeng-custom | INDEL | * | map_l100_m0_e0 | * | 82.0840 | 75.0480 | 90.5759 | 91.5253 | 1173 | 390 | 1557 | 162 | 36 | 22.2222 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | het | 82.3208 | 74.2631 | 92.3398 | 93.0978 | 1033 | 358 | 1326 | 110 | 36 | 32.7273 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | het | 82.4242 | 74.4318 | 92.3395 | 93.1454 | 1048 | 360 | 1338 | 111 | 36 | 32.4324 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | * | 80.7260 | 70.7025 | 94.0610 | 93.9470 | 946 | 392 | 1172 | 74 | 36 | 48.6486 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.9874 | 96.4793 | 99.5434 | 33.1326 | 7810 | 285 | 7849 | 36 | 36 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.4114 | 96.3910 | 96.4318 | 79.9786 | 1282 | 48 | 1081 | 40 | 36 | 90.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7103 | 96.0354 | 99.4447 | 23.8949 | 6613 | 273 | 6626 | 37 | 36 | 97.2973 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | hetalt | 94.3987 | 92.4975 | 96.3796 | 46.9642 | 937 | 76 | 985 | 37 | 36 | 97.2973 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2099 | 94.9264 | 93.5043 | 70.1531 | 580 | 31 | 547 | 38 | 36 | 94.7368 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.7267 | 84.4595 | 73.7226 | 75.5793 | 125 | 23 | 101 | 36 | 36 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | * | homalt | 98.0267 | 98.6547 | 97.4067 | 67.1719 | 1540 | 21 | 1540 | 41 | 36 | 87.8049 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5394 | 97.9595 | 99.1262 | 72.9162 | 6289 | 131 | 6239 | 55 | 36 | 65.4545 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.0932 | 95.6186 | 98.6140 | 50.2202 | 3339 | 153 | 3344 | 47 | 36 | 76.5957 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 86.0339 | 92.9032 | 80.1105 | 83.0206 | 144 | 11 | 145 | 36 | 36 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 66.3507 | 66.6667 | 66.0377 | 73.7624 | 72 | 36 | 70 | 36 | 36 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.7458 | 94.6281 | 94.8637 | 60.4149 | 916 | 52 | 905 | 49 | 36 | 73.4694 | |
| jpowers-varprowl | SNP | ti | segdup | homalt | 99.6282 | 99.9600 | 99.2985 | 89.1736 | 7502 | 3 | 7502 | 53 | 36 | 67.9245 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.2072 | 94.5177 | 93.8987 | 91.9751 | 2724 | 158 | 2724 | 177 | 36 | 20.3390 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | * | 96.8429 | 94.6197 | 99.1732 | 57.6142 | 6419 | 365 | 6357 | 53 | 36 | 67.9245 | |