PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74101-74150 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | HG002compoundhet | * | 99.1131 | 98.7784 | 99.4501 | 47.4326 | 8814 | 109 | 9224 | 51 | 34 | 66.6667 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.1931 | 99.5911 | 96.8338 | 44.7388 | 2192 | 9 | 2202 | 72 | 34 | 47.2222 | |
| ciseli-custom | INDEL | D16_PLUS | HG002complexvar | het | 53.6535 | 38.4824 | 88.5714 | 55.2511 | 426 | 681 | 434 | 56 | 34 | 60.7143 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.2924 | 78.0000 | 80.6283 | 58.3878 | 156 | 44 | 154 | 37 | 34 | 91.8919 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 80.6080 | 68.7048 | 97.5000 | 81.0516 | 3517 | 1602 | 3510 | 90 | 34 | 37.7778 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 69.7828 | 56.1178 | 92.2449 | 67.9389 | 1353 | 1058 | 1356 | 114 | 34 | 29.8246 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | het | 62.5277 | 49.4159 | 85.1107 | 78.7243 | 423 | 433 | 423 | 74 | 34 | 45.9459 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 43.4690 | 29.6943 | 81.0811 | 66.1792 | 204 | 483 | 150 | 35 | 34 | 97.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.1184 | 79.6209 | 82.6733 | 50.0000 | 168 | 43 | 167 | 35 | 34 | 97.1429 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3543 | 98.5726 | 92.3394 | 77.6916 | 4696 | 68 | 4701 | 390 | 34 | 8.7180 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | het | 97.2238 | 97.1315 | 97.3163 | 90.3357 | 5113 | 151 | 5113 | 141 | 34 | 24.1135 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | het | 97.9959 | 99.6627 | 96.3839 | 70.0308 | 45206 | 153 | 43739 | 1641 | 34 | 2.0719 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | het | 97.9986 | 99.6659 | 96.3860 | 71.4860 | 46244 | 155 | 44753 | 1678 | 34 | 2.0262 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | het | 98.0064 | 99.6695 | 96.3978 | 71.5205 | 46743 | 155 | 45226 | 1690 | 34 | 2.0118 | |
| eyeh-varpipe | SNP | ti | map_siren | het | 99.1597 | 99.7515 | 98.5748 | 60.2517 | 62227 | 155 | 60657 | 877 | 34 | 3.8769 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4243 | 97.9408 | 91.1515 | 88.7786 | 761 | 16 | 752 | 73 | 34 | 46.5753 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | het | 87.1650 | 97.8052 | 78.6127 | 93.0154 | 5080 | 114 | 5032 | 1369 | 34 | 2.4836 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| gduggal-bwavard | SNP | tv | segdup | * | 98.0164 | 97.1871 | 98.8601 | 94.3820 | 8292 | 240 | 8239 | 95 | 34 | 35.7895 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.2248 | 80.8271 | 85.7692 | 82.1796 | 215 | 51 | 223 | 37 | 34 | 91.8919 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.3757 | 99.3548 | 81.2183 | 83.8259 | 154 | 1 | 160 | 37 | 34 | 91.8919 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | het | 76.0794 | 61.7119 | 99.1672 | 89.0304 | 13086 | 8119 | 13098 | 110 | 34 | 30.9091 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | * | 75.8315 | 61.2995 | 99.3947 | 87.0105 | 18548 | 11710 | 18555 | 113 | 34 | 30.0885 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | * | 76.0359 | 61.5656 | 99.3981 | 86.9873 | 18820 | 11749 | 18827 | 114 | 34 | 29.8246 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.7364 | 78.3970 | 97.0612 | 92.7953 | 7160 | 1973 | 7167 | 217 | 34 | 15.6682 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.7364 | 78.3970 | 97.0612 | 92.7953 | 7160 | 1973 | 7167 | 217 | 34 | 15.6682 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| hfeng-pmm1 | INDEL | I6_15 | * | het | 98.8608 | 98.2558 | 99.4734 | 57.1305 | 9858 | 175 | 9823 | 52 | 34 | 65.3846 | |
| jlack-gatk | SNP | tv | map_l150_m0_e0 | het | 89.8651 | 98.2765 | 82.7801 | 89.5464 | 2794 | 49 | 2793 | 581 | 34 | 5.8520 | |
| hfeng-pmm2 | SNP | * | map_l100_m0_e0 | * | 99.2701 | 99.4001 | 99.1404 | 70.5461 | 32644 | 197 | 32640 | 283 | 34 | 12.0141 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | * | 99.2283 | 99.3662 | 99.0908 | 76.3631 | 30415 | 194 | 30409 | 279 | 34 | 12.1864 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e0 | * | 99.2475 | 99.3878 | 99.1076 | 77.7218 | 31657 | 195 | 31651 | 285 | 34 | 11.9298 | |
| hfeng-pmm2 | SNP | * | map_l150_m2_e1 | * | 99.2528 | 99.3946 | 99.1113 | 77.7651 | 32015 | 195 | 32009 | 287 | 34 | 11.8467 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.0881 | 92.2652 | 86.1224 | 81.9720 | 334 | 28 | 211 | 34 | 34 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.4390 | 99.1515 | 95.7845 | 70.5720 | 818 | 7 | 818 | 36 | 34 | 94.4444 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.4390 | 99.1515 | 95.7845 | 70.5720 | 818 | 7 | 818 | 36 | 34 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3292 | 95.2834 | 99.4647 | 22.7525 | 6505 | 322 | 6504 | 35 | 34 | 97.1429 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.5223 | 87.0289 | 96.5049 | 73.3713 | 993 | 148 | 994 | 36 | 34 | 94.4444 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9948 | 94.0299 | 93.9597 | 71.1380 | 567 | 36 | 560 | 36 | 34 | 94.4444 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.6481 | 99.5697 | 99.7266 | 69.7354 | 31009 | 134 | 31007 | 85 | 34 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m1_e0 | homalt | 99.6655 | 99.5323 | 99.7990 | 60.4404 | 17876 | 84 | 17877 | 36 | 34 | 94.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3114 | 96.4304 | 98.2086 | 62.1384 | 1864 | 69 | 1864 | 34 | 34 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.6617 | 94.2604 | 99.1884 | 62.0692 | 5009 | 305 | 5011 | 41 | 34 | 82.9268 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8625 | 98.1712 | 99.5636 | 45.3709 | 8213 | 153 | 8213 | 36 | 34 | 94.4444 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.2074 | 76.7402 | 95.7746 | 76.7746 | 1356 | 411 | 1360 | 60 | 34 | 56.6667 | |