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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1477 1478 1479 1480 1481 1482 1483 1484 1485 ... 1720 1721 » 74001-74050 / 86044 show all
gduggal-snapvard	INDEL	D1_5	func_cds	het	87.2852	100.0000	77.4390	47.4359	85	0	127	37	33	89.1892
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
anovak-vg	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.9828	97.6625	98.3051	30.8535	2674	64	2668	46	33	71.7391
anovak-vg	SNP	*	map_l125_m0_e0	homalt	85.5602	75.1937	99.2421	70.8421	5047	1665	4976	38	33	86.8421
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.4369	98.7908	98.0854	58.8485	3840	47	3996	78	33	42.3077
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.3908	95.3819	99.4860	25.9321	6568	318	6581	34	33	97.0588
astatham-gatk	INDEL	D6_15	HG002compoundhet	hetalt	97.1670	94.8841	99.5625	24.4483	7734	417	7738	34	33	97.0588
astatham-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	96.9663	95.1890	98.8113	52.9502	3324	168	3325	40	33	82.5000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7159	97.8795	97.5528	69.2597	1754	38	1754	44	33	75.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8780	94.3944	99.4959	25.6896	6500	386	6513	33	33	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8171	100.0000	90.1449	70.2842	311	0	311	34	33	97.0588
bgallagher-sentieon	SNP	ti	map_l125_m1_e0	het	99.0798	99.3430	98.8180	74.4018	18146	120	18142	217	33	15.2074
bgallagher-sentieon	SNP	ti	map_l125_m2_e0	het	99.0858	99.3537	98.8194	75.6140	18754	122	18750	224	33	14.7321
bgallagher-sentieon	SNP	ti	map_l125_m2_e1	het	99.0933	99.3608	98.8273	75.6520	18965	122	18961	225	33	14.6667
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.6730	92.4844	99.0893	41.0583	3261	265	3808	35	33	94.2857
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.6730	92.4844	99.0893	41.0583	3261	265	3808	35	33	94.2857
asubramanian-gatk	SNP	*	map_siren	het	78.4554	64.6317	99.8014	73.5808	58809	32182	58800	117	33	28.2051
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	34.8293	37.7778	32.3077	48.0000	17	28	21	44	33	75.0000
astatham-gatk	SNP	*	map_l100_m1_e0	het	86.7442	76.7367	99.7535	74.2815	34807	10552	34796	86	33	38.3721
astatham-gatk	SNP	*	map_l100_m2_e0	het	86.8923	76.9650	99.7597	75.4072	35711	10688	35700	86	33	38.3721
astatham-gatk	SNP	*	map_l100_m2_e1	het	86.9224	77.0139	99.7569	75.4083	36118	10780	36107	88	33	37.5000
rpoplin-dv42	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.7353	98.9667	98.5050	75.1773	2969	31	2965	45	33	73.3333
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	94.1097	95.4459	92.8105	80.6084	503	24	426	33	33	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.7679	94.4049	99.2523	24.5186	4505	267	4513	34	33	97.0588
egarrison-hhga	SNP	*	map_l100_m0_e0	*	99.3454	98.8977	99.7972	67.0353	32479	362	32480	66	33	50.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	98.4855	98.1673	98.8057	79.9095	6535	122	6536	79	33	41.7722
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.4972	95.5852	99.4871	26.0156	6582	304	6595	34	33	97.0588
dgrover-gatk	INDEL	D6_15	HG002compoundhet	hetalt	97.2251	94.9945	99.5630	24.6392	7743	408	7747	34	33	97.0588
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	93.8354	92.2330	95.4944	66.5970	760	64	763	36	33	91.6667
egarrison-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	63.3593	46.6406	98.7609	37.5052	3346	3828	2949	37	33	89.1892
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8165	94.2782	99.4953	23.7106	6492	394	6505	33	33	100.0000
ckim-vqsr	INDEL	D6_15	HG002compoundhet	hetalt	96.9271	94.4179	99.5733	24.1268	7696	455	7700	33	33	100.0000
dgrover-gatk	SNP	ti	map_l125_m1_e0	het	99.2150	99.2992	99.1308	75.9575	18138	128	18134	159	33	20.7547
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	93.7961	88.8038	99.3832	46.4455	7424	936	7412	46	33	71.7391
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	92.2039	88.9215	95.7380	70.2861	1212	151	1213	54	33	61.1111
ckim-isaac	INDEL	D1_5	HG002compoundhet	homalt	74.1154	66.3230	83.9827	64.7328	193	98	194	37	34	91.8919
ckim-isaac	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.0619	94.5157	99.7491	65.9214	20698	1201	20677	52	34	65.3846
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	86.6087	82.5871	91.0420	67.8424	498	105	498	49	34	69.3878
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.0420	87.8244	94.5043	58.5344	880	122	877	51	34	66.6667
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.7434	96.7060	96.7809	72.0820	2378	81	2345	78	34	43.5897
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.5419	90.7051	98.7175	44.4016	2830	290	2848	37	34	91.8919
eyeh-varpipe	INDEL	*	map_l100_m0_e0	homalt	96.1789	96.8566	95.5107	86.4425	493	16	851	40	34	85.0000
eyeh-varpipe	INDEL	C1_5	HG002compoundhet	homalt	0.0000	0.0000	22.4138	90.5537	0	0	13	45	34	75.5556
eyeh-varpipe	INDEL	C1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	0.0000	75.8389	94.4299	0	0	113	36	34	94.4444
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2368	99.3209	97.1761	73.3746	1170	8	1170	34	34	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	*	99.2854	99.2467	99.3242	70.6721	21607	164	21604	147	34	23.1293
dgrover-gatk	SNP	ti	map_l125_m2_e0	het	99.2165	99.3060	99.1273	77.0589	18745	131	18741	165	34	20.6061
dgrover-gatk	SNP	ti	map_l125_m2_e1	het	99.2226	99.3137	99.1317	77.0880	18956	131	18952	166	34	20.4819

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