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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1475 1476 1477 1478 1479 1480 1481 1482 1483 ... 1720 1721 » 73901-73950 / 86044 show all
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4894	99.5224	99.4565	52.2754	6043	29	6039	33	33	100.0000
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	95.2014	93.3840	97.0909	41.7126	1228	87	1335	40	33	82.5000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ckim-dragen	SNP	*	map_l100_m2_e0	homalt	99.6377	99.4114	99.8650	58.3933	27361	162	27366	37	33	89.1892
ckim-dragen	SNP	*	map_l100_m2_e1	homalt	99.6376	99.4100	99.8663	58.3837	27632	164	27637	37	33	89.1892
ciseli-custom	SNP	*	segdup	het	95.5747	98.0713	93.2020	92.0353	16983	334	16891	1232	33	2.6786
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	87.3183	98.1551	78.6365	59.0389	3937	74	3968	1078	33	3.0612
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	46.0775	80.1389	32.3344	77.7959	577	143	615	1287	33	2.5641
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	62.8906	92.3251	47.6872	81.6922	2442	203	2464	2703	33	1.2209
ciseli-custom	SNP	tv	map_l250_m0_e0	homalt	73.5751	73.5751	73.5751	93.4487	142	51	142	51	33	64.7059
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.7699	98.6301	94.9785	83.2774	864	12	662	35	33	94.2857
ciseli-custom	INDEL	I1_5	map_l100_m1_e0	homalt	54.1379	40.1544	83.0645	82.5475	208	310	206	42	33	78.5714
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	96.8242	94.2928	99.4953	23.7079	6493	393	6506	33	33	100.0000
ckim-gatk	INDEL	D6_15	HG002compoundhet	hetalt	96.9335	94.4301	99.5733	24.1244	7697	454	7701	33	33	100.0000
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2353	99.2360	97.2546	73.3953	1169	9	1169	33	33	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.7785	99.2790	98.2829	78.8740	28505	207	28505	498	33	6.6265
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7785	99.2790	98.2829	78.8740	28505	207	28505	498	33	6.6265
ckim-gatk	SNP	ti	*	homalt	99.6240	99.2571	99.9936	16.1503	797072	5966	797063	51	33	64.7059
ckim-gatk	SNP	ti	map_l150_m2_e0	het	85.4716	76.2984	97.1519	89.8925	9828	3053	9824	288	33	11.4583
ckim-gatk	SNP	ti	map_l150_m2_e1	het	85.5750	76.4656	97.1484	89.9190	9952	3063	9948	292	33	11.3014
gduggal-bwafb	SNP	*	map_l250_m1_e0	het	97.0310	96.9085	97.1537	89.8249	4608	147	4608	135	33	24.4444
gduggal-bwafb	SNP	*	map_l250_m2_e0	het	97.2051	97.0928	97.3176	90.2537	5043	151	5043	139	33	23.7410
eyeh-varpipe	INDEL	I6_15	map_siren	*	77.9593	69.5082	88.7500	73.3555	212	93	284	36	33	91.6667
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	96.5155	99.7628	93.4730	54.4025	6728	16	6559	458	33	7.2052
gduggal-bwafb	INDEL	D16_PLUS	HG002complexvar	het	83.6409	73.8031	96.5049	50.3136	817	290	994	36	33	91.6667
eyeh-varpipe	INDEL	C6_15	*	homalt	0.0000	0.0000	64.6259	92.9598	0	0	95	52	33	63.4615
eyeh-varpipe	INDEL	D16_PLUS	*	hetalt	28.3581	16.7098	93.6210	67.5396	323	1610	499	34	33	97.0588
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	28.2195	16.6235	93.3071	68.0905	321	1610	474	34	33	97.0588
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	28.2195	16.6235	93.3071	68.0905	321	1610	474	34	33	97.0588
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	79.2133	76.5550	82.0628	67.6812	160	49	183	40	33	82.5000
eyeh-varpipe	INDEL	D6_15	map_l100_m2_e0	homalt	74.5239	83.0769	67.5676	84.9389	54	11	75	36	33	91.6667
eyeh-varpipe	INDEL	I6_15	HG002complexvar	hetalt	50.4268	34.5053	93.6293	59.7826	422	801	485	33	33	100.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	85.0307	86.8852	83.2536	52.9279	106	16	174	35	33	94.2857
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.4563	82.1519	98.1864	56.4502	1947	423	1949	36	33	91.6667
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	83.3739	71.9097	99.1866	76.8457	4270	1668	4268	35	33	94.2857
gduggal-bwaplat	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	86.9639	78.4943	97.4823	82.5580	2471	677	2478	64	33	51.5625
gduggal-bwaplat	SNP	ti	map_l125_m1_e0	*	75.1104	60.3648	99.3885	86.1772	17708	11627	17715	109	33	30.2752
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	59.7005	42.6942	99.2246	54.0503	4903	6581	4863	38	33	86.8421
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	53.4225	56.2232	50.8876	80.9255	131	102	86	83	33	39.7590
gduggal-bwafb	SNP	tv	HG002compoundhet	homalt	99.1913	99.5573	98.8280	47.3709	3373	15	3373	40	33	82.5000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	86.8775	97.0427	78.6399	89.4490	886	27	902	245	33	13.4694
gduggal-bwafb	SNP	tv	map_l150_m1_e0	het	97.9431	98.3732	97.5168	78.3908	6833	113	6833	174	33	18.9655
gduggal-bwafb	SNP	tv	map_l150_m2_e0	het	97.9956	98.4280	97.5670	79.8007	7138	114	7138	178	33	18.5393
gduggal-bwafb	SNP	tv	map_l150_m2_e1	het	98.0150	98.4486	97.5853	79.8450	7234	114	7234	179	33	18.4358
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	71.9701	57.8195	95.2912	87.3887	769	561	769	38	33	86.8421
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	95.2685	95.4338	95.1039	78.5282	836	40	641	33	33	100.0000
jli-custom	INDEL	D6_15	HG002compoundhet	hetalt	97.6428	95.7919	99.5667	24.6880	7808	343	7812	34	33	97.0588
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.5234	99.1268	97.9273	65.2174	6130	54	6142	130	33	25.3846
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	79.9744	90.9326	71.3733	92.8433	351	35	369	148	33	22.2973
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	98.2548	98.6087	97.9035	45.6956	3402	48	3409	73	33	45.2055

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