PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73751-73800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | * | map_l100_m2_e1 | het | 99.4258 | 99.1322 | 99.7211 | 65.3522 | 46491 | 407 | 46480 | 130 | 32 | 24.6154 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | * | 99.5693 | 99.3532 | 99.7862 | 62.2569 | 47621 | 310 | 47614 | 102 | 32 | 31.3725 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | * | 99.5722 | 99.3566 | 99.7887 | 64.0145 | 48646 | 315 | 48639 | 103 | 32 | 31.0680 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | * | 99.5757 | 99.3634 | 99.7889 | 64.0077 | 49170 | 315 | 49163 | 104 | 32 | 30.7692 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1492 | 98.5802 | 99.7249 | 57.4159 | 19580 | 282 | 19573 | 54 | 32 | 59.2593 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6252 | 94.1534 | 99.2303 | 30.5059 | 4493 | 279 | 4512 | 35 | 32 | 91.4286 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | het | 98.6808 | 97.7128 | 99.6681 | 67.9602 | 20720 | 485 | 20721 | 69 | 32 | 46.3768 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0218 | 97.3951 | 98.6566 | 81.2038 | 4038 | 108 | 4039 | 55 | 32 | 58.1818 | |
| qzeng-custom | SNP | ti | map_l150_m1_e0 | homalt | 79.2986 | 65.9888 | 99.3340 | 70.0903 | 4835 | 2492 | 4773 | 32 | 32 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1549 | 98.4124 | 93.9987 | 87.3444 | 8988 | 145 | 9022 | 576 | 32 | 5.5556 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.1549 | 98.4124 | 93.9987 | 87.3444 | 8988 | 145 | 9022 | 576 | 32 | 5.5556 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9409 | 98.7725 | 99.1098 | 44.1885 | 3621 | 45 | 3674 | 33 | 32 | 96.9697 | |
| qzeng-custom | INDEL | D1_5 | map_siren | het | 92.9621 | 88.8889 | 97.4265 | 85.9785 | 2024 | 253 | 2120 | 56 | 32 | 57.1429 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6343 | 97.3404 | 84.7926 | 70.8333 | 183 | 5 | 184 | 33 | 32 | 96.9697 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9023 | 98.7622 | 99.0427 | 58.2117 | 3830 | 48 | 3828 | 37 | 32 | 86.4865 | |
| mlin-fermikit | SNP | ti | * | het | 98.8419 | 97.7886 | 99.9182 | 14.5462 | 1253549 | 28348 | 1253519 | 1026 | 32 | 3.1189 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6770 | 98.5789 | 98.7753 | 48.4673 | 3954 | 57 | 3952 | 49 | 32 | 65.3061 | |
| ltrigg-rtg2 | SNP | ti | segdup | * | 99.2028 | 99.6980 | 98.7126 | 86.7471 | 19478 | 59 | 19475 | 254 | 32 | 12.5984 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.3288 | 97.1175 | 97.5410 | 72.9162 | 1314 | 39 | 1309 | 33 | 32 | 96.9697 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.9399 | 93.0416 | 99.0245 | 57.0442 | 3784 | 283 | 3756 | 37 | 32 | 86.4865 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4167 | 97.7259 | 97.1096 | 71.4786 | 6274 | 146 | 6249 | 186 | 32 | 17.2043 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4167 | 97.7259 | 97.1096 | 71.4786 | 6274 | 146 | 6249 | 186 | 32 | 17.2043 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.3568 | 80.3493 | 91.0299 | 77.5037 | 552 | 135 | 548 | 54 | 32 | 59.2593 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | * | 68.0208 | 61.1429 | 76.6423 | 91.6157 | 107 | 68 | 105 | 32 | 32 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7080 | 99.9112 | 97.5335 | 63.5201 | 2250 | 2 | 2254 | 57 | 32 | 56.1404 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2022 | 100.0000 | 96.4680 | 43.7034 | 1311 | 0 | 1311 | 48 | 32 | 66.6667 | |
| ltrigg-rtg1 | INDEL | * | HG002complexvar | homalt | 99.4013 | 98.9677 | 99.8388 | 52.4987 | 26747 | 279 | 26629 | 43 | 32 | 74.4186 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5400 | 99.2100 | 99.8721 | 70.2148 | 30518 | 243 | 30461 | 39 | 32 | 82.0513 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8607 | 96.3706 | 99.3977 | 55.2797 | 15188 | 572 | 15184 | 92 | 32 | 34.7826 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8166 | 98.1371 | 99.5056 | 55.0392 | 19492 | 370 | 19523 | 97 | 32 | 32.9897 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1956 | 90.5120 | 98.1916 | 59.9330 | 3606 | 378 | 3638 | 67 | 32 | 47.7612 | |
| jli-custom | SNP | ti | HG002complexvar | het | 99.9353 | 99.9002 | 99.9704 | 16.9557 | 314452 | 314 | 314418 | 93 | 32 | 34.4086 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.6332 | 95.7628 | 99.5781 | 24.7836 | 7752 | 343 | 7788 | 33 | 32 | 96.9697 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.6055 | 95.7176 | 99.5693 | 26.7854 | 7823 | 350 | 7860 | 34 | 32 | 94.1176 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 57.5781 | 55.1232 | 60.2618 | 82.2738 | 850 | 692 | 1151 | 759 | 32 | 4.2161 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | * | 85.3263 | 79.9784 | 91.4407 | 90.7363 | 1478 | 370 | 1720 | 161 | 32 | 19.8758 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 16.5768 | 23.8066 | 12.7153 | 80.3047 | 384 | 1229 | 406 | 2787 | 32 | 1.1482 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 37.4436 | 44.5341 | 32.3009 | 86.3021 | 607 | 756 | 657 | 1377 | 32 | 2.3239 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.0329 | 79.1574 | 96.6486 | 67.1233 | 1071 | 282 | 1067 | 37 | 32 | 86.4865 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 74.1073 | 99.0588 | 59.1965 | 64.7074 | 3894 | 37 | 3949 | 2722 | 32 | 1.1756 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | het | 79.5566 | 73.6888 | 86.4399 | 92.5370 | 1700 | 607 | 1855 | 291 | 32 | 10.9966 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | het | 79.3653 | 73.4102 | 86.3720 | 92.6210 | 1720 | 623 | 1876 | 296 | 32 | 10.8108 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | * | 71.3819 | 70.0855 | 72.7273 | 85.2349 | 82 | 35 | 128 | 48 | 32 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.0092 | 16.5049 | 37.9747 | 64.0909 | 34 | 172 | 30 | 49 | 32 | 65.3061 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 49.3293 | 70.3704 | 37.9747 | 63.2558 | 19 | 8 | 30 | 49 | 32 | 65.3061 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.1492 | 94.2273 | 98.1512 | 80.5335 | 3689 | 226 | 3610 | 68 | 32 | 47.0588 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9882 | 96.8323 | 99.1721 | 49.4419 | 9782 | 320 | 9703 | 81 | 32 | 39.5062 | |
| gduggal-snapvard | SNP | ti | segdup | homalt | 98.6062 | 97.6815 | 99.5484 | 88.2591 | 7331 | 174 | 7275 | 33 | 32 | 96.9697 | |